Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50500 1236 / 0 ATVPS53, HIT1 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2) AT1G50970 513 / 1e-173 Membrane trafficking VPS53 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009635 [exp] 1338 / 0 AT1G50500 1140 / 0.0 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023000 [exp] 1363 / 0 AT1G50500 1263 / 0.0 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04100 [flax] [poplar] Vps53_N Vps53-like, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10009007 pacid=23173385 polypeptide=Lus10009007 locus=Lus10009007.g ID=Lus10009007.BGIv1.0 annot-version=v1.0 ATGGACAAGTCTAGTGCGCTGGAGTACATCAACCAGATGTTTCCTACAGAGGCATCTTTATCTGGTGTCGAGCCGCTGATGCAAAAGATTCACAGTGAGA TACGCCGTGTAGATGCAGGCATACTTGCAGCTGTTCGCCAACAGAGCAACTCCAGAACCAAAGCCAAAGAAGATCTTGCAGCTGCTACAGGTGCTGTGGA GGAACTCATGTTTAAGATTCGAGAAATAAAGACCAAAGCTGAGCAAAGTGAAACAATGGTCCAGGAGATTTGCCGTGACATTAAGAAACTGGACTTTGCG AAGAAACATATCACAACCACGATTACTGCACTTCATCGTCTTACTATGCTAGTGTCAGCTGTTGAACAGCTTCAAGTTATGGCTTCAAAACGAAATTACA AAGAAGCAGCTGCTCAGCTGGAGGCTGTAAACCAATTGTGTAGTCACTTTGAAGCCTACAGGGACATACCAAAGATTATGGAGCTCAGGGAGAAGTTCAA AAATATCAAACAAATACTCAAATCTCATGTATTTTCCGACTTCTCAAGCTTGGGTACTGGAAAAGAGACAGAAGAAACGAATTTGCTACAGCAGTTATCT GATGCATGTTTGGTGGTTGACGCTTTGGAGCCATCTGTTAGAGAAGAGTTGGTTAATAATTTCTGTAGCAGGGAGCTTACTTCATATGAACAGATATTTG AAGGAGCTGAACTAGCAAAGCTGGATAAAACTGAACGAAGATATGCATGGATTAAACGTCGGATCAGAACAAATGAGGAGATTTGGAAGATCTTCCCACT ATCATGGCATGTTCCTTATCGTCTCTGCATCCAGTTCTGCAAGAAAACAAGAAAACAACTAGAGGGAATACTTGAAAATCTCAAGGATAAGCCTGATGTT GGAGCTCTGTTACTGGCCCTACAACGAACTCTAGAATTTGAAGATGAACTGGCAGAGAAATTTGGGGGTGGTTCTCAGAAGGAGGTTGGGATTGAGATAG AAGAAATAGGTAGAGAAAATAACAGTCAAACTGTTTCCGATATTCGGAAAAAGTATGAAAGAAAGCTAGCAGTACATCAGGAAAACGAAGGCGAAGAAAA AGATGGAAATAGAGATTTGTCAGCGCCTGCAGCTGGGTTTAACTTCCGTGGAATCATCTCATCTTGCTTTGAACCATATCTTACGAGCTATGTGGAACTA GAGCAGAAGACACTGATGGAGAATCTGGAGAAACTTGTTCAGGAGGAAAAGTGGGATATCGAAGAGGGTAGTCAGAACAATGTCTTATCTAGTAGCATGC AGCTGTTTCTCATCATTAAGAGGAGCTTAAAACGTTGCAGTGCTCTAACAAAGAGCCAGACTCTGCTCAACCTGTTCAGGGTATTTGAAAAAATTCTCAA AGCGTATGCTGCAAAGCTCAAGGCAAAATTGCCCAAGGGTGGTGTGGGAATTGTTGCAGCAGCTACGGGTATGGATGGGCAGATAAAGACATCTGATAGG GATGAAAGGGTGATTTGCTATATCGTCAATTCAGCTGAATACTGCAGAAATACATCAGGTGAGCTGGCTGAAAGCGTATCAAGAATAATAGATCCTCAAC TTGCAGCTGGTGCAGATATGTCAGCTGTAGAAGAAGAGTTCTCTGGGCTTATAACGGAGGCACTAATGACCTTGGTGCATGGCTTGGAAACTAAGTTTGA CGTTGAAATGGCTGCAATGACACGTGTTCCCTGGGCTACACTTGAAAGTGTCGGTGATCAATCCGGGTATGTCAATGGCATAAATATGATCCTAACAAGC AGCACTCCTGTGCTCGGGAGCCTCCTCGCACCTGTTCACTTCCAGTACTTCTTAGACAAGCTTGCATCATCTCTTGGTCCACGATTCTACACCAACATTT TCAAGTGCAAACAGATATCTGAAACTGGAGCACAACAGATGCTTTTAGATACCCAAGCTGTGAAGACAATTCTTCTCGAGATTCCAGTCCTTGGTCGACA GATGTCTAGTGCTGCCAGCTATTCGAAGTTTGTTAGCCGTGAGATGAGTAAAGCCGAAGCACTTTTGAAGGTTATTCTTTCCCCAGTTGATTCCGTGGCT GATACATATAGAGCGTTATTACCAGAGGGAACTCCAATGGAGTTCCAGCGAATTTTGGAGCTCAAGGGTCTCAAAAAGGCGGATCAACAGACGATACTCG ACGACTTCAACAAGCAAAGTCCACCCGTTTCGCAACCTTCGATCCTGCCATCGCCACCACCAGCATCATCATCAACGGTCATTACTACAGCACCAATCAC TACACCAGCCACGGCTATGGCAGCAGCAACTTCTCTAGCATCCCACCCTTCGCTCGGCCTGACTGCTACCTCCCGTGAAGACGTCCTCGCCAGGGCAGCT GCTCTCGGCCGTGGTGCTGCCACGACCGGGTTCAAAAGATTACTGGCCTTAACCGGATTCCTGGCCCTAACCGAAGCTGCCAAAGACCGCAAGGATGGTC CTTTCAGAAAACTTTTCAATGCTTAG
AA sequence Show only first row Show all	>Lus10009007 pacid=23173385 polypeptide=Lus10009007 locus=Lus10009007.g ID=Lus10009007.BGIv1.0 annot-version=v1.0 MDKSSALEYINQMFPTEASLSGVEPLMQKIHSEIRRVDAGILAAVRQQSNSRTKAKEDLAAATGAVEELMFKIREIKTKAEQSETMVQEICRDIKKLDFA KKHITTTITALHRLTMLVSAVEQLQVMASKRNYKEAAAQLEAVNQLCSHFEAYRDIPKIMELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLS DACLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIWKIFPLSWHVPYRLCIQFCKKTRKQLEGILENLKDKPDV GALLLALQRTLEFEDELAEKFGGGSQKEVGIEIEEIGRENNSQTVSDIRKKYERKLAVHQENEGEEKDGNRDLSAPAAGFNFRGIISSCFEPYLTSYVEL EQKTLMENLEKLVQEEKWDIEEGSQNNVLSSSMQLFLIIKRSLKRCSALTKSQTLLNLFRVFEKILKAYAAKLKAKLPKGGVGIVAAATGMDGQIKTSDR DERVICYIVNSAEYCRNTSGELAESVSRIIDPQLAAGADMSAVEEEFSGLITEALMTLVHGLETKFDVEMAAMTRVPWATLESVGDQSGYVNGINMILTS STPVLGSLLAPVHFQYFLDKLASSLGPRFYTNIFKCKQISETGAQQMLLDTQAVKTILLEIPVLGRQMSSAASYSKFVSREMSKAEALLKVILSPVDSVA DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKQSPPVSQPSILPSPPPASSSTVITTAPITTPATAMAAATSLASHPSLGLTATSREDVLARAA ALGRGAATTGFKRLLALTGFLALTEAAKDRKDGPFRKLFNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009007 [exp]	0	1
AT5G58510			unknown protein		Lus10031287 [exp]	7.2	0.8489
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	11.1	0.8552
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	18.1	0.8199
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	20.9	0.8222
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	21.2	0.8432
AT1G35220			unknown protein		Lus10010355 [exp]	25.1	0.8384
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	25.7	0.8170
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	27.2	0.8313
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	36.7	0.8108
AT1G50120			unknown protein		Lus10040977 [exp]	37.8	0.8157

Compare expression of checked genes

Lus10009007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.