Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 527 / 0 FAD-binding Berberine family protein (.1) AT1G34575 476 / 7e-164 FAD-binding Berberine family protein (.1) AT1G30710 473 / 6e-163 FAD-binding Berberine family protein (.1) AT1G30720 462 / 1e-158 FAD-binding Berberine family protein (.1) AT4G20840 462 / 2e-158 FAD-binding Berberine family protein (.1) AT1G30730 461 / 4e-158 FAD-binding Berberine family protein (.1) AT1G30760 460 / 8e-158 FAD-binding Berberine family protein (.1) AT1G11770 445 / 6e-152 FAD-binding Berberine family protein (.1) AT1G26380 442 / 8e-151 FAD-binding Berberine family protein (.1) AT4G20800 441 / 2e-150 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035466 [exp] 682 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 532 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 484 / 4e-167 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 436 / 3e-148 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10021289 [exp] 435 / 5e-148 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 435 / 7e-148 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023374 [exp] 432 / 4e-147 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 430 / 2e-146 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 429 / 3e-145 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158300 [exp] 619 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 563 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 562 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 547 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 543 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 542 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 538 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 536 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 510 / 2e-177 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 509 / 4e-177 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10009009 pacid=23173375 polypeptide=Lus10009009 locus=Lus10009009.g ID=Lus10009009.BGIv1.0 annot-version=v1.0 ATGGTAACACTCCGCTCTCCAACCACCGACGGCGACGCAATTAAAGAAACATTCATCTCTTCCCTCTTCAAAAACTCCGATCCATCCCACCCAATCGCCG GCGCGATCTACACCGAAACCCACCCTTCATACTCCTCCGTTCTCAATGCTTACATCCACAACCTCCGCTTCACCACCCCAGCAACTCCCAAACCATTCCT CATCCTCACCGCCCTCCACGAATCCCACGTACAGGCTGCCGTAATCTCCGCTTCGAAAACCGGTATTCAGATGAAGATCCGGAGCGGTGGCCATGACTAC GAAGGCAGGTCCTACACCTCTGCCTCCTCAACAGCCGCTCCGTTCTTCATCCTGGACATGTGCAACTTCCGCAGAATCCAACTCGACTTCGAGTCGGAGA CCGCGTGGGTCGAGTGCGGGGCCACGCTCGGGGAGCTCTACTATCGCATTGCGGAACAGAGCCCCGTCCACGCCTTCCCAGCGGGTGCGTGCCCCACCGT GGGTGTGGGCGGCCACCTCATTGGAGGTGGCTACGGCGCCATCACGAGGAAGTACGGTCTGTCCACTGACAACATTGTCGACGCTCGCGTGGTCAACGCG AGCGGAGAAATCCTCAACGGGAGGAAATCGATGGGGGAGGATCTGTTTTGGGCTATCCGCGGCGGCGGGTCAAGCTTTGCGGTGGTGCTGGCGTATAAAG TCAAATTAGTCAGAGTTCCTGAAATTGTCACCATGCTAGGTGTCGAGAGGACATTGGAGGAGAATGCCACCGATTTGGTGTACACGTGGCAGGAGGTGGG CCCTACTGCTGACGCGGATCTCTTCTTCAAGTTCGTGGCGGAGGTTGTAAGAAAACAGACGAGCAGGGGCGGTGAGAAGACGATAAAGGTCACGTTTAAA GGGATGTATCTGGGGAGAAAGGACAAGTTGATGTCCATAATGGGGAAAAAATTTCCACGGCTAGGATTGTCGGAGTCGGACTGCAAGGAAATGAGATGGA TTGAAACGGTGCCGTATTGGATGTACGTGCCGGAAGGGACACGACTCGAGGAAGCGTTGTTGAGCCGACGACGGAGACCGGATGAGAAGCTAGTTTACTT GAAGATGAAGTCGGATTACGTCGAGAACCCGATTTCGAAGGAAGGACTCGAGAAGATATGGAGGAAGATGATGGAGCTCGAAGTCGTGAAGATGGGGTTC AACCCGTACGGAGGGAGGCTAAGCGAGATATCCCCCGAAGCGACACCGTTTCCTCACCGGGCCGGGAATCTAGCCAAGATTCAGTACCAAACCAGCTGGA CCGAACACGGGCCCGATCCCGAGAGGCTGCATTTGGATTCGTTGCGAGATATGTACGATTACATGGCTCCTTACGTTTCGAGCTCCCCAAGGAGTGCGTT TGTAAACTATATCGATCTCGATCTGGGGACCAACGGCCACCACCGCAAGTCCAGCTACGAGGAAGCGAGGCGTTACGGGCTCAGCTACTTCAAGGGGAAC TTCGACAGGTTGGTGAAGATCAAGAGCAGGGTGGATCCTGGTAATGTGTTTCGATCTGAGCAGAGCATCCCGATATCTCCTCAGCCCAAACTATGA
AA sequence Show only first row Show all	>Lus10009009 pacid=23173375 polypeptide=Lus10009009 locus=Lus10009009.g ID=Lus10009009.BGIv1.0 annot-version=v1.0 MVTLRSPTTDGDAIKETFISSLFKNSDPSHPIAGAIYTETHPSYSSVLNAYIHNLRFTTPATPKPFLILTALHESHVQAAVISASKTGIQMKIRSGGHDY EGRSYTSASSTAAPFFILDMCNFRRIQLDFESETAWVECGATLGELYYRIAEQSPVHAFPAGACPTVGVGGHLIGGGYGAITRKYGLSTDNIVDARVVNA SGEILNGRKSMGEDLFWAIRGGGSSFAVVLAYKVKLVRVPEIVTMLGVERTLEENATDLVYTWQEVGPTADADLFFKFVAEVVRKQTSRGGEKTIKVTFK GMYLGRKDKLMSIMGKKFPRLGLSESDCKEMRWIETVPYWMYVPEGTRLEEALLSRRRRPDEKLVYLKMKSDYVENPISKEGLEKIWRKMMELEVVKMGF NPYGGRLSEISPEATPFPHRAGNLAKIQYQTSWTEHGPDPERLHLDSLRDMYDYMAPYVSSSPRSAFVNYIDLDLGTNGHHRKSSYEEARRYGLSYFKGN FDRLVKIKSRVDPGNVFRSEQSIPISPQPKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30700			FAD-binding Berberine family p...		Lus10009009 [exp]	0	1
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	13.3	0.8875
					Lus10020157 [exp]	14.4	0.8715
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	20.8	0.8515
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	40.9	0.8518
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	49.6	0.8437
					Lus10021703 [exp]	62.9	0.8347
AT3G21945			Receptor-like protein kinase-r...		Lus10028980 [exp]	65.0	0.8370
AT1G43580			Sphingomyelin synthetase famil...		Lus10042814 [exp]	68.5	0.8430
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10028541 [exp]	69.0	0.8352
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10038890 [exp]	76.5	0.8285

Compare expression of checked genes

Lus10009009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.