Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18215 258 / 3e-87 Protein of unknown function, DUF599 (.1) AT5G24600 186 / 6e-59 Protein of unknown function, DUF599 (.1.2) AT4G31330 108 / 2e-28 Protein of unknown function, DUF599 (.1) AT5G10580 103 / 1e-26 Protein of unknown function, DUF599 (.1.2) AT5G24790 91 / 7e-22 Protein of unknown function, DUF599 (.1) AT5G46060 88 / 6e-21 Protein of unknown function, DUF599 (.1) AT5G43180 66 / 7e-13 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009640 [exp] 271 / 1e-92 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1) Lus10005272 [exp] 182 / 1e-56 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 181 / 3e-56 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 177 / 4e-55 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 177 / 1e-54 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10026976 [exp] 112 / 4e-30 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 103 / 1e-26 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 101 / 9e-26 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10020172 [exp] 83 / 2e-19 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001300 [exp] 206 / 2e-66 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 203 / 2e-65 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 116 / 7e-32 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 91 / 8e-22 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 90 / 1e-21 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 66 / 9e-13 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10009010 pacid=23173384 polypeptide=Lus10009010 locus=Lus10009010.g ID=Lus10009010.BGIv1.0 annot-version=v1.0 ATGGAGGAATCGGAGCTGGATTTCGTGTTAGTCCCGTTAGGATTACTGGTGATGCTACTATACCACAGCTGGCTTCTCTTCACGATCCTCAACCATCCGA CCCGCACAGTGATCGGCATCAACTCTCAGTCTCGCCACCAGTGGGTTCACACCTTGATGACTGACCCGTTGAAGAACGGTGTGCTGGCAGTTCAAACCCT GCGGAACAACATCATGGCATCAACGCTTTTGGCAACGACAGCCATCACTCTAAGCTCGCTGATCAGCGTGTTCGTCAGCAGCAAATCGAACTCGACCGAC TCGGCGCAGCAGCTCGTGTACGGTAACAAGACTCCTTTCTTATCCTCCATCAAGTACTTCTCGATCCTGCTGTGTTTCCTGGTCGCGTTCCTGTGCAATG TACAGTCCATTAGGTACTACGCGCACGTCAGCTTCCTGGCCACCATACCGTCGTCCTCCTCGAGTAAAGACTCGATCGAGTACGTTGCTCGACACCTGAA CAGGGGGAGCTTCTTCTGGTCGCTCGGGCTTCGAGCTTACTACGTTTCGTTCCCTCTGTTCCTGTGGGTGTTTGGTCCTATACCGATGTTCGTCTGCTGC TGGATGATGTGCTTTACGCTGTATTTTCTCGATACTACGACGAGCTTCACGAGGCTGCTTCACTCTCACTCGGTCAAGTCAAGGACCGATCATGCTGATC TCGAATCGGTTTGA
AA sequence Show only first row Show all	>Lus10009010 pacid=23173384 polypeptide=Lus10009010 locus=Lus10009010.g ID=Lus10009010.BGIv1.0 annot-version=v1.0 MEESELDFVLVPLGLLVMLLYHSWLLFTILNHPTRTVIGINSQSRHQWVHTLMTDPLKNGVLAVQTLRNNIMASTLLATTAITLSSLISVFVSSKSNSTD SAQQLVYGNKTPFLSSIKYFSILLCFLVAFLCNVQSIRYYAHVSFLATIPSSSSSKDSIEYVARHLNRGSFFWSLGLRAYYVSFPLFLWVFGPIPMFVCC WMMCFTLYFLDTTTSFTRLLHSHSVKSRTDHADLESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	3.2	0.8660
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	4.6	0.8673
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	4.9	0.8284
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	7.2	0.8364
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	7.7	0.8319
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	8.8	0.8095
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	10.0	0.8321
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	10.7	0.8470
AT4G34630			unknown protein		Lus10028793 [exp]	11.0	0.8054
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	12.0	0.8122

Compare expression of checked genes

Lus10009010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.