Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17980 824 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT2G25850 683 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT4G32850 683 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT3G06560 273 / 4e-83 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009641 [exp] 1225 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10021643 [exp] 1012 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 1001 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10006029 [exp] 698 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 661 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 649 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10005490 [exp] 601 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043200 [exp] 954 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.006G235400 [exp] 706 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.018G057200 [exp] 701 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.008G102500 [exp] 283 / 2e-87 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04926 [flax] [poplar] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain CL0260 [flax] [poplar] PF04928 [flax] [poplar] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Lus10009011 pacid=23173327 polypeptide=Lus10009011 locus=Lus10009011.g ID=Lus10009011.BGIv1.0 annot-version=v1.0 ATGGGGTCAGTAGGATTAAGCAACAGGCCTAATGGGCAGCAGCAAAGGTTAGGCATTACTGATCCTATATCTCTGAGTGGACCGTCGGAGTACGATGTGA TGAAGACTCGGGAGCTTGAACAGTATCTCCAAGATGTAAACTTGTATGAGAGTAGAGAGGAAGCTGTATCGAGGGAAGAAGTGCTTGGGCGGCTAGACCA GATTGTCAAGCACTGGGTCAAAGTTATTAGTCGCAACAAAGGGTTGAATGAGCAATTGGTTCACGAAGCAAATGCGAAGATCTTCACTTTTGGTTCTTAT AGGCTAGGGGTGCATAGCCCGGGTGCCGATATAGACACACTTTGTGTGGGACCTAGGCACGCAACACGTGAGGAGGATTTCTTTGGAGAATTGCGAAACA TGCTCTCGGAGATGCCTGAAGTAACGGAGTTGCACCCTGTCCCTGATGCTCATGTTCCAGTCATGAAGTTCAAATTCAAAGGAGTATCTATAGATTTACT CTATGCTAAATTGTCTTTGTGGATTATTCCCGAAGATCTTGATATTTCACAAGACTCGATATTACAAAATACTGATGAGCAGACTGTTCGTAGTCTTAAT GGTTGCAGAGTCACTGACCAGATCTTGCGTCTGGTACCAAATATTCAGAACTTTCGAACAACCTTACGCTGCATGAGGTTTTGGGCAAAGCGGCGTGGTG TATATTCAAACGTTGCTGGGTTTCTTGGTGGTATCAATTGGGCATTACTCGTAGGTCGCATTTGCCAGTTGTTTCCAAATGCATATCCCAACATGCTGGT GTCTCGATTCTTCAGAGTTTTTACTCAGTGGAGGTGGCCAAATCCTGTCATGCTTTGTGCTATTGAAGATAGGTCCCTTGGCCTTCAGATTTGGGACCCG AGAAGAAACCACAAAGATAGATATCACCTGATGCCTATAATCACTCCTGCATACCCTAGTATGAATTCCAGCTATAATGTCTCTACAAGCACTCTGCGGA TCATGTCTGAAGAGTTTCAGAGAGGAAACGAGATATGCGAGGCTATGGAAGCAAACAATGCAAACTGGGACACCCTCTTCGAGCCGTTTACTTTCTTCGA AGCATACAAGAACTATCTGCAAGTAAATATCGGGGCAGAAAACGAAGATGACTTGCGGAACTGGCAAGGTTGGGTTGAATCTCGTCTCCGTATCCTAATG TTGAAGATTGAGAAGTACACTTACAATATGCTTCAGTGTCATCCACACCCAGGGGAGTTTTCCGACAAATCGAAGCCCTTACACTACTGCTACTTCATGG GCTTGCAACGTAAACAAGGAGTTCCTGCCAACGAAGGCGGGCAGTTCGATATAAGGGAGACTGTCAACGAATTTAAACACACGGTCAACTTGTACACAAT GTGGAAGCCCGGAATGGAGATCCAGGTTACCCATGTGAAACGAAGGAGCATACCAAACTTTGTTTTCCCCGGTGGAGTTCGTCCATCTCGTCCGGCTAGA ATAACGTGGGATAGCAAGCGGAGTTTGGAAGCTAAGGCTTCCGGCAAGCCATCTGAAGGCGAAGGAGGAAGCGGTGGATCAGACGAAAGGAAGAGAAAAC GTATAGAGGATAATTCGGAGGATAACGCTGGTGTTAAGTGCTTGGCCACTGCCTTATCTTCATCCATTGAAGAAAATGGAGATAGTCCTCCTGTAAGAGT CCCTGTAAGTGCGAACCAGTCCGGGGAATCAATCAGGGAACAGGAGAATCTTGCCAGCTCAGCAGACCTAAAAGCTACCATTGATCATCTCCCCTACGGC CTTGAGAGATCAAGTTCAAGAGAGGTTGAGAAGTTGGCGATTGAGGAAATGATGTCTGGACCGTACGATAGCCATCAAGCTTCACCACCGCTAGAAATCG ACGAGCTTGAAGTTGACAAGGATTCGGCAGGTAATAATGACAAAGGTAGTCCGGTGGAGTCTTCTTCGACTTCTAGTAAAACAGCTGCGTCGACAATCAC AAATTCGCCTCCGGTGATACCGTTAGCATCTTGCAGTGGAGTTGTTTCATCGAAATTTCCCTGCTCTCATGGAACTTTCGATGAGCTTGAGCCTGCTGAA CTCGTTGCACCATCTCCAGCAGCACCCGTGGCAGTGCGAAAGCCCCTCATCAGGTTGAACTTCACTTCCCTGGGGAAAACTCACTAG
AA sequence Show only first row Show all	>Lus10009011 pacid=23173327 polypeptide=Lus10009011 locus=Lus10009011.g ID=Lus10009011.BGIv1.0 annot-version=v1.0 MGSVGLSNRPNGQQQRLGITDPISLSGPSEYDVMKTRELEQYLQDVNLYESREEAVSREEVLGRLDQIVKHWVKVISRNKGLNEQLVHEANAKIFTFGSY RLGVHSPGADIDTLCVGPRHATREEDFFGELRNMLSEMPEVTELHPVPDAHVPVMKFKFKGVSIDLLYAKLSLWIIPEDLDISQDSILQNTDEQTVRSLN GCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVGRICQLFPNAYPNMLVSRFFRVFTQWRWPNPVMLCAIEDRSLGLQIWDP RRNHKDRYHLMPIITPAYPSMNSSYNVSTSTLRIMSEEFQRGNEICEAMEANNANWDTLFEPFTFFEAYKNYLQVNIGAENEDDLRNWQGWVESRLRILM LKIEKYTYNMLQCHPHPGEFSDKSKPLHYCYFMGLQRKQGVPANEGGQFDIRETVNEFKHTVNLYTMWKPGMEIQVTHVKRRSIPNFVFPGGVRPSRPAR ITWDSKRSLEAKASGKPSEGEGGSGGSDERKRKRIEDNSEDNAGVKCLATALSSSIEENGDSPPVRVPVSANQSGESIREQENLASSADLKATIDHLPYG LERSSSREVEKLAIEEMMSGPYDSHQASPPLEIDELEVDKDSAGNNDKGSPVESSSTSSKTAASTITNSPPVIPLASCSGVVSSKFPCSHGTFDELEPAE LVAPSPAAPVAVRKPLIRLNFTSLGKTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	0	1
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	4.0	0.7604
AT1G03910			unknown protein		Lus10027731 [exp]	7.7	0.7109
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	14.1	0.7456
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	14.8	0.7384
AT1G11050			Protein kinase superfamily pro...		Lus10029711 [exp]	18.2	0.6357
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	19.8	0.6672
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	22.3	0.6736
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	24.5	0.6476
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	25.5	0.6757
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	28.6	0.6777

Compare expression of checked genes

Lus10009011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.