Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48650 1525 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 1306 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G04895 1286 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 823 / 0 RNA helicase family protein (.1) AT1G58060 534 / 2e-166 RNA helicase family protein (.1) AT1G58050 476 / 1e-145 RNA helicase family protein (.1) AT2G30800 317 / 1e-89 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 297 / 2e-82 NIH nuclear DEIH-boxhelicase (.1) AT4G18465 271 / 2e-77 RNA helicase family protein (.1) AT5G10370 211 / 4e-55 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009643 [exp] 1837 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10013479 [exp] 1371 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 1365 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034126 [exp] 1274 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 1273 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009022 [exp] 778 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 558 / 0 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10001415 [exp] 320 / 2e-91 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 320 / 2e-91 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042500 [exp] 1577 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G117800 [exp] 1414 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 1326 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 1304 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 824 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 497 / 7e-153 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 312 / 2e-88 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.005G071500 [exp] 209 / 1e-54 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.012G034200 [exp] 195 / 3e-50 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 192 / 2e-49 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10009012 pacid=23173337 polypeptide=Lus10009012 locus=Lus10009012.g ID=Lus10009012.BGIv1.0 annot-version=v1.0 ATGCCGTCCTGCTCAGTTATTCTCCATGGCTGCGTGAAACCCAGAACAGTATTCGGTTCGTTAAGGCCGACTTCCGCCGCTCTTGCTTTGCGCAGTCTTC GGAGGACTGTCCATGTTGCTTCACTGAAGCCTTCGTTATCCATGGCAGCTCTTAGTAATTCATACTCTTCCTCCTCCTCATCACTCTACTTTCCTCCTCG TTTCCGCGGGAATGGAGCCGCGAACAAGTGTTTCAGCGATGTCAGTGGCAAGGGATTTAAAGGAGCTCCCTTTTCGATTCTGAATTGGAGGCTTGCTGCA TTGCCGTCGAGTCTCTATCTTCCGAGCTTCAATTACGGCCGACATGCCTACCGGGAAGAGTCCAGCGATGAGTCTGAGCTGGAATCAGGATCATCTCAGC AGGCCATGAATGCTTCAACGCTTGATAATTTAGAGGATTGGAGATGGAAGCTAACCATGCTTATGCGTAACAAAAGTGAGCAAGAAGTTGTTTCCAGAGA AAGAAAGGATCGACGAGATTTTCAGCAAATCTCTGCGATTTCTGATCGAATGGGATTATATAGCCGTCAGTATTCCAAAGTAATCGTCATTAGCAAGTGT CCTCTGCCAAACTACCGGCCTGATTTGGACGATAGGCGGCCGATTAGGGAGGTGGTGTTACCTTTCGGACTGCATAGGGAAGTTTCGACTCATCTCCGTT CGCACCTTTCAAAGAAGCCTACCAGCAAGGGAGGCACTTCTAGTTTATCTTTGGGGTCCAGTAGTGTGGAATCTGAAGAGACGTTGTACGACGAGCGGGA GCCTGTTGTACTGAGTAATGCTACTAAAGAACGAGTCTTTCGAGGGAGAAGTTTGCAGATGCGTAGCCGGCAGCAGGAATGGAAGGAATCTCCCGAGGGA CAAAAGATGACTCAGTTTCGAGAAAGCCTTCCTGCGTACAAAGAAAAAGATGCATTATTGAAATCTCTTGCTGAGAATCAGGTCACGGTCGTGTCAGGCG AAACAGGTTGTGGAAAAACGACACAATTGCCTCAGTACATACTCGAATCCGAAATCGATGCAGCTCGTGGCGCTGTCTGTAATATTATATGTACTCAGCC TAGAAGAATATCCGCTATGACTGTTGCTGAAAGAGTTGCTGCTGAAAGAGGAGAGAAAATTGGCGAATCAGTTGGATATAAGGTTCGTTTGGAGGGCATG AAGGGGAAAGATACGCGTCTCCTTTTCTGTACTACCGGGGTGTTGTTAAGGAGATTACTTCTTGATAGGAACTTGAGAGGAGTAACTCATGTTATTGTCG ATGAAATTCATGAGCGAGGAATGAATGAAGATTTCCTTCTAATTGTTCTGAGGGATCTCCTTCCTCGTCGACCTGAGTTGAGGTTGGTTTTGATGAGTGC AACACTAAATGCTGAGCTTTTTTCCTCTTATTTTGACGGTGCTCCAACGCTCCACATTCCTGGTTTTACATACCCAGTACGGCAGCACTTCCTAGAGAAC ATTTTAGAGACTATCGGATACAGGCTAACTCCACATAATCAAATCGACGATTACGGCCAAGAAAAGACATGGAAAATGCAGAAACAAGCTCAAATGTTTG GTGGAAAGAGGAAGAGCCAGATTGCTTCTGCTGTGGAGGATACACTTGAATCTACAGACTTCAGAGGCTACAGCAGCCGCACTCAGGAATCCTTATCCAA TTGGAATCCCGACTCAATCGGGTTTAACCTCATTGAGCAAGTCCTTTGTCACATTGTGAAGAATGAGAGGCCCGGTGCTGTGTTGGTGTTCATGACTGGC TGGGATGACATTAACTCTTTAAAGGATAAACTCGGGTGTAACCCGGTCTTAGGAGACCGAAGCAAAGTTTTATTACTTGCATGCCACGGCTCCATGGCCA GCTCTGAGCAGAGGTTGATCTTTGATAAGCCAGAAGATGGTATGAGGAAAATTGTTCTAGCAACAAACATGGCCGAAACTAGCATTACCATCAACGATGT AGTATTTGTCGTTGATTGTGGAAAAGCCAAAGAAACATCATATGATGCATTGAACAATACGCCGTGTTTGCTTCCTTCCTGGATTTCGAAAGCTTCTGCT CGACAAAGAAAAGGAAGGGCTGGTCGTGTACAGCCTGGTGAATGCTATCATCTTTATCCAAGAAGCGTTTACGATGCTTTTGCTGAGTATCAATTGCCTG AACTGTTGCGCACGCCTTTACAGTCCCTCTGTCTACAAATAAAGAGTCTACAGCTAGGAAGTATCTCCGAGTTCTTATCTCAGGCCTTGCAGCCTCCTGA AGCATTATCGGTTCAAAATGCTGTTGAATATTTGAAGGTGATTGGGGCCCTAGACGAGAAGGAGAACTTGACAGTGTTAGGTAAGCAATTGTCAGTGCTG CCAGTTGAGCCTAAGCTTGGCAAAATGCTGATTCTAGGAACGATATTCAAATGTCTGGACCCGATCATGACCGTGGTTGCCGGTCTTAGTGTCCGAGATC CGTTCTTGACGCCTTTCGACAGGAAGGATCTTGCAGAGGCCGCGAAAGCTCAATTTGCTGCTAAAAGTTACAGCGACCATCTTACTATAGTTCGAGCTTA TGACGGGTGGAAGAATGCCGAGAGACAGCAATCTGGTTACGAGTATTGCTGGAAGAACTTCTTGTCGGCTCAGACTCTTAGAGCCGTTGAGTCTCTTCGC AAGCAGTTCTACTCTTTGCTTAGGGACGCCAACTTGATCGATCAGGATGTAGAGAACTGTAACGCATGGAGCCAAGATGTGAATCTTGTACGAGCCGTCA TTTGTGCTGGCTTGTCCCCTGGGATTTGCTCTGTTCTGAATAAGGAGAAGTCGATAGCGTTGAAGACAATGGAGGACGGTATGGTGCTTCTGTACTCGAG TTCAGTGAACGGAAGTGTACCAAGGATTCCGTACCCATGGTTGGTGTTCAACGAAAAAGTGAAGGTGAATTCGGTCTTTCTTCGGGATTCCACTGCTGTA TCTGATTCTGTACTCCTCCTATTTGGAGGCAGAGTTTCAGCTGGTGGACTAGACGGACATCTGAAAATGCTCAGCGGCTACTTGGAATTCTTGATGAAGC CCGAATTGGCCGAAACATATTTAACTTTGAAGAGTGAGCTTGAAGAGCTTATTCAGAAGAAACTACTTGATCCAAAGCTGGACATGGAGTCCTACTCCGA CTTGTTGAGGGCAACCCGCACATTGGTATCAGAGGACCAATGCGAGGGAAGGTTCGTATTCGGTCGCAAGCTTCCGGCAGCTCCCAAAAAGATAGTAACC GGAAACGGAGGAGACCGGGGAAATGGAGGTGATAATGCCAAGAGCCAGCTGCAAACATTGCTCTCAAGGGGCGGACATTCGAACGGTAACTATACGACTG TGCCAATGAAGCTTAATCGGTTCCGTTCAACCGTGATGTTCAATGGTTTGTCCTTCACCGGGGTGCCTTGCGGTAGCAAGAAAGACGCTGAGCAGTCAGC AGCTGCCGAGGCTCTATTGTGGTTGAAGGGAGATACGCAGTCACCTTCGAAACACATTGATCATGTATCGACAATTCTGAAGCCGAGCAAAGGCAAGAAG CAAGGTAATAGACGGAAGGGAGAGACATATTCATCTTCAGAAGAGATGGATCCCGAATCGATGTTTCAGAGGCGGAGGAGAAGCAGGAAGCAAGGTAGCA GTAGAGTGACTGTCCCTAGTGGTAGGTGGTGA
AA sequence Show only first row Show all	>Lus10009012 pacid=23173337 polypeptide=Lus10009012 locus=Lus10009012.g ID=Lus10009012.BGIv1.0 annot-version=v1.0 MPSCSVILHGCVKPRTVFGSLRPTSAALALRSLRRTVHVASLKPSLSMAALSNSYSSSSSSLYFPPRFRGNGAANKCFSDVSGKGFKGAPFSILNWRLAA LPSSLYLPSFNYGRHAYREESSDESELESGSSQQAMNASTLDNLEDWRWKLTMLMRNKSEQEVVSRERKDRRDFQQISAISDRMGLYSRQYSKVIVISKC PLPNYRPDLDDRRPIREVVLPFGLHREVSTHLRSHLSKKPTSKGGTSSLSLGSSSVESEETLYDEREPVVLSNATKERVFRGRSLQMRSRQQEWKESPEG QKMTQFRESLPAYKEKDALLKSLAENQVTVVSGETGCGKTTQLPQYILESEIDAARGAVCNIICTQPRRISAMTVAERVAAERGEKIGESVGYKVRLEGM KGKDTRLLFCTTGVLLRRLLLDRNLRGVTHVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLVLMSATLNAELFSSYFDGAPTLHIPGFTYPVRQHFLEN ILETIGYRLTPHNQIDDYGQEKTWKMQKQAQMFGGKRKSQIASAVEDTLESTDFRGYSSRTQESLSNWNPDSIGFNLIEQVLCHIVKNERPGAVLVFMTG WDDINSLKDKLGCNPVLGDRSKVLLLACHGSMASSEQRLIFDKPEDGMRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKASA RQRKGRAGRVQPGECYHLYPRSVYDAFAEYQLPELLRTPLQSLCLQIKSLQLGSISEFLSQALQPPEALSVQNAVEYLKVIGALDEKENLTVLGKQLSVL PVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFLTPFDRKDLAEAAKAQFAAKSYSDHLTIVRAYDGWKNAERQQSGYEYCWKNFLSAQTLRAVESLR KQFYSLLRDANLIDQDVENCNAWSQDVNLVRAVICAGLSPGICSVLNKEKSIALKTMEDGMVLLYSSSVNGSVPRIPYPWLVFNEKVKVNSVFLRDSTAV SDSVLLLFGGRVSAGGLDGHLKMLSGYLEFLMKPELAETYLTLKSELEELIQKKLLDPKLDMESYSDLLRATRTLVSEDQCEGRFVFGRKLPAAPKKIVT GNGGDRGNGGDNAKSQLQTLLSRGGHSNGNYTTVPMKLNRFRSTVMFNGLSFTGVPCGSKKDAEQSAAAEALLWLKGDTQSPSKHIDHVSTILKPSKGKK QGNRRKGETYSSSEEMDPESMFQRRRRSRKQGSSRVTVPSGRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	0	1
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10009626 [exp]	1.0	0.9353
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	1.4	0.9225
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	5.7	0.9002
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	6.5	0.8948
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	6.9	0.9181
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	7.7	0.9165
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10012587 [exp]	8.4	0.8846
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031839 [exp]	13.7	0.8801
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	15.2	0.9031
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	17.8	0.9070

Compare expression of checked genes

Lus10009012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.