Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18080 491 / 2e-173 BGLU44 B-S glucosidase 44 (.1) AT3G18070 452 / 2e-158 BGLU43 beta glucosidase 43 (.1.2) AT1G26560 303 / 1e-99 BGLU40 beta glucosidase 40 (.1) AT4G21760 283 / 1e-91 BGLU47 beta-glucosidase 47 (.1) AT5G54570 280 / 1e-90 BGLU41 beta glucosidase 41 (.1) AT2G44480 274 / 1e-89 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 275 / 7e-89 BGLU15 beta glucosidase 15 (.1) AT5G24540 276 / 8e-89 BGLU31 beta glucosidase 31 (.1) AT5G44640 272 / 8e-88 BGLU13 beta glucosidase 13 (.1) AT1G61820 268 / 9e-88 BGLU46 beta glucosidase 46 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009644 [exp] 587 / 0 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031234 [exp] 308 / 2e-101 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 307 / 3e-101 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 305 / 4e-100 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031235 [exp] 303 / 9e-100 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10019531 [exp] 293 / 6e-96 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10004654 [exp] 291 / 5e-95 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 290 / 2e-94 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 289 / 2e-94 AT1G26560 778 / 0.0 beta glucosidase 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041300 [exp] 498 / 6e-176 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 496 / 2e-175 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G227300 [exp] 301 / 7e-99 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.008G094200 [exp] 296 / 3e-97 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.004G040700 [exp] 295 / 1e-96 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 295 / 2e-96 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 293 / 5e-96 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.010G159900 [exp] 290 / 9e-95 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G227200 [exp] 285 / 1e-92 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G409900 [exp] 278 / 4e-90 AT5G54570 791 / 0.0 beta glucosidase 41 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10009013 pacid=23173353 polypeptide=Lus10009013 locus=Lus10009013.g ID=Lus10009013.BGIv1.0 annot-version=v1.0 ATGCTCGAAAAAGGTATCACTCCTTATGCAAACCTTTACCACTATGACATGCCTCTAGCATTGGAGACGAGATACATGGGGTTACTCAATCGTCAAGTTC TGGAGGACTACGCAGACTATGCAGAGTTCTGCTTCAAGACGTTCGGGGACAGGGTGAAGAACTGGATGACATTCAACGAGCCAAGAGTGACGGCCGCACT AGGGTATGGCAACGGAATTTTCGCATCGGGGAGGTGTTCGAAGTCGTACGGAAATTGCACCGAAGGGAATTCCGGTACCGAACCATACATTGCTGCTCAT AACCTGATCTTAGCTCATGCAGCAGCCGTACAGAGATACCGCCACAAGTATCAAGAGAAACAAAAGGGTAGGATTGGAATTTTGCTTGATTTCGTTTGGT ACGAACCACTCCCTAGAGGGAAAGCTGATAACTATGCCGCTCAGAGAGCTAGGGACTTCCACATTGGATGGTTTCTTCACCCAATAGTGTATGGTGAGTA CCCAAAGACAATGCAAGAAATCCTTGGGAACAGGCTGCCCAAATTCACAACAGAGGAGGCTAAAATGGTAAAAGGCTCATTTGATTATATTGGCATCAAC CAATACACAGCTTACTATATGTATGATCCACATCAGAAGAATCAGCCTAAAGATTGCCAAAAATGGCATCCCGATCGGTCCAAGAGTAACCCAACCGTGA TCTTGTCCGAAAACGGTATGGATCAGCCCGGGAACGTGACATTTCCTAAGGTGTTACAAGACACGGTGAGGGTGAACTACTACAAGGCTTACCTGCAGCA ACTGAAGAAGGCGGCCGATGATGGAGCCAACGTGATTGGCTACTTTGCGTGGTCGTTGCTCGACAACTTCGAATGGCTATCAGGCTACACCTCGAGATTC AGGATCGTGTACGTTGACTATGGCAACCTCAAGCGATATCCGAAGATGTCATCTTACTGGTTTCAGAAGATGCTCAACCGTAAGAAGTAA
AA sequence Show only first row Show all	>Lus10009013 pacid=23173353 polypeptide=Lus10009013 locus=Lus10009013.g ID=Lus10009013.BGIv1.0 annot-version=v1.0 MLEKGITPYANLYHYDMPLALETRYMGLLNRQVLEDYADYAEFCFKTFGDRVKNWMTFNEPRVTAALGYGNGIFASGRCSKSYGNCTEGNSGTEPYIAAH NLILAHAAAVQRYRHKYQEKQKGRIGILLDFVWYEPLPRGKADNYAAQRARDFHIGWFLHPIVYGEYPKTMQEILGNRLPKFTTEEAKMVKGSFDYIGIN QYTAYYMYDPHQKNQPKDCQKWHPDRSKSNPTVILSENGMDQPGNVTFPKVLQDTVRVNYYKAYLQQLKKAADDGANVIGYFAWSLLDNFEWLSGYTSRF RIVYVDYGNLKRYPKMSSYWFQKMLNRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10009013 [exp]	0	1

Compare expression of checked genes

Lus10009013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.