Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57030 167 / 1e-45 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G74010 152 / 5e-41 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G74020 152 / 1e-40 SS2 strictosidine synthase 2 (.1) AT3G57010 144 / 2e-37 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G74000 142 / 2e-37 SS3 strictosidine synthase 3 (.1) AT2G41290 142 / 1e-36 SSL2 strictosidine synthase-like 2 (.1) AT5G22020 142 / 1e-36 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 135 / 2e-34 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 134 / 6e-34 SSL1 strictosidine synthase-like 1 (.1) AT1G08470 129 / 2e-32 SSL3 strictosidine synthase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009650 [exp] 542 / 0 AT1G74010 156 / 3e-44 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009014 [exp] 491 / 3e-165 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10009651 [exp] 397 / 1e-134 AT3G57030 163 / 2e-48 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009649 [exp] 392 / 2e-131 AT1G74020 155 / 6e-44 strictosidine synthase 2 (.1) Lus10009646 [exp] 327 / 2e-104 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10009648 [exp] 313 / 9e-101 AT3G57030 192 / 4e-58 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10013370 [exp] 138 / 3e-35 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10008451 [exp] 137 / 7e-35 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10034411 [exp] 126 / 5e-32 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037700 [exp] 222 / 3e-66 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1) Potri.012G046200 [exp] 207 / 5e-61 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.008G109966 [exp] 177 / 2e-49 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 177 / 2e-49 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 167 / 2e-45 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 162 / 2e-43 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 153 / 9e-41 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.001G214500 [exp] 136 / 1e-34 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.007G130700 [exp] 119 / 1e-28 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 115 / 3e-27 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10009015 pacid=23173347 polypeptide=Lus10009015 locus=Lus10009015.g ID=Lus10009015.BGIv1.0 annot-version=v1.0 ATGGCTTTTGCGACCGCAATATTCTTACTTGTTGCCTTTTCTCCATTTGCTTCCTTTGTTGTGATGGCTCAGACGACGTCGTTCAGACAACTCCACTTCC CGCCTGGAAAACCGGGCGGGTTCTCTGTAGCCTTCGCTCCCTTCGGTCAGTTATTCACCAGCTTCACCGACGGCCATATCTATCAGTACCGTCCCTGGGC CGGCAGCTGGCGTTTCTTTGCTTACACTGCTCCGACCAGATATACATATATGGATAACGCTTCGTCTCTCATCAATGCTCGTCATTTTCAAGCCTGTAGA TTAAATAGACAACTTCTGCAAACGTCTCGTCTCCACCTCACACCCGTAGATAAAGCAATTATGGCCTTCGTCCCGACGGCCATCACTGCCGTTGCTATTT CTATAGTCGTTGTCTTTTCTACATTTCCTCCCCTTGTGGTGTCTCGAATACTAATATTCAAGCAGCAACACTTCCCACCCGGGAATCCAAGTGGGTATTC GGTCGCTGTTGCTCCAGGAGGTGTGCTCTTCGCTGGCATCCGAGATGGTCTTGTCCTTCGGTATTGTCCCTCCACCGGCTGGAGAACGTTTGCTTACATC TCCCCGACCAGGACAAATGCTGCTTGCGACGGTTCGACCGACCCGAATTTATGGCCGGTTTGTGGATTTCCGGGAGGAGTGGCACACGACATGTTGACGG GACAGGTCTATATAGCCGGGGGCTACCAAGGTTTGGTGGCGGCAGGACCTGAACCCGGCAAGCTAGCCACGCCACTTGCTACCGTCGCTGATGATGGTGT TCCTTTTAAAGCCACCATCGGCGTCGAATTTAATCTGATGAATAAGAACATGGTTTATTTCACTGACTGCAGCACCGATTACAATATCAGTGTGTGGAAG CTAGGAGTCCGGGCAAGCGACATGTCGGGTAGGCTAATGCAGTACAACACCAACACCCGACGGGTCACGGTACTCCGTAGCGGACTAGGTTGGCCAACAG GAGTGGCCGCTAGTGCCGACTGCTCTTTCCTTCTCGTCAGCGAAACCAGCCTCGGGAGGATCACCCGAGTGTGGCTGACAGGACCGATGGCAGGGACATC AGAGCCGTTCATAACGAACATTGCACTGCCGGTGAACATTAAGCGGACCGTAGATGGCGAATTCTTGATCGCAGCGCACATGGTGGATGCGGCTTCCCAA AAGTTGGGACCGATCGCAGTGAGGGCGGATGCGACCGGGAGGATCATCGAAACGACGTCGCTTAGGGAGGAGTATGGGAACATTATAATAACCGAGGTGA ACCAGCCTTTGATAACATTAAGGCAGGATCATTTTCCGGCGGGGTCCGTGGCCGTGGCTCCCGGCGGTGTGATCTTCACCGGCCTCGGAGATGGCCGTAT CCTTCAGTACCGTGGTCCCGTTGCTGGCTGGCGGATCTTTGCCTACACCGCTCCGACGAGAGAGACTTGTGATAACAAAACCGAACCAGATTCCAAACCG GTTTGCGGTTACCCATTGGGTTTGGCATACAACAGTTTGAAAGGAGAGCTCTATATAGCTGACGCATACCAAGGCCTGATGATGGCCGGACAGGCTGCCG GAATGCAAGCTACGCCACTTGCCACCACCGCTGAAGGCGTTCCTTTCTCAGCAACCACCGCCCTCGACTTCGATCCAGCGACCGGAATTGTCTATTTCAT TGACAAAAGCACCAAGTACCGGATCAGTGACTCGATCCTAGCGATCGAGTCAAACGACATGACAGGAAGGCTAATGCAGTACGATACAAACAAGAGGCAA GTCACCGTGCTCCTAAGTAACCTAGGTTTCCCCGGTGGAGTGGCGGTGAGCAACGACGGCTCGTTCATTCTAGTGACCGAAACCGGCCAAAACAAAACGA CTCGGTTCTGGGTGAGGGGGCCCAAGGCCAACACATCCGAGCCGTTCTTAACGAACATCGTACGGCCTGAAAACATCAAACGGACGATCTTGGGCAAGTT CTGGATCGCGGCCATGGTGGCGAACCAACCACATTTCGAACTGATGGTTCCAATCAGGGTGATGGCGGAAGAGATTCAAAAGGAAGTGAACGGCGCAATC ATCTATACCACGTCGCTCGAGCCCGAGTACTATGGGAGGATTCACATGAGTGAGGTACATCCAGTCAATTAA
AA sequence Show only first row Show all	>Lus10009015 pacid=23173347 polypeptide=Lus10009015 locus=Lus10009015.g ID=Lus10009015.BGIv1.0 annot-version=v1.0 MAFATAIFLLVAFSPFASFVVMAQTTSFRQLHFPPGKPGGFSVAFAPFGQLFTSFTDGHIYQYRPWAGSWRFFAYTAPTRYTYMDNASSLINARHFQACR LNRQLLQTSRLHLTPVDKAIMAFVPTAITAVAISIVVVFSTFPPLVVSRILIFKQQHFPPGNPSGYSVAVAPGGVLFAGIRDGLVLRYCPSTGWRTFAYI SPTRTNAACDGSTDPNLWPVCGFPGGVAHDMLTGQVYIAGGYQGLVAAGPEPGKLATPLATVADDGVPFKATIGVEFNLMNKNMVYFTDCSTDYNISVWK LGVRASDMSGRLMQYNTNTRRVTVLRSGLGWPTGVAASADCSFLLVSETSLGRITRVWLTGPMAGTSEPFITNIALPVNIKRTVDGEFLIAAHMVDAASQ KLGPIAVRADATGRIIETTSLREEYGNIIITEVNQPLITLRQDHFPAGSVAVAPGGVIFTGLGDGRILQYRGPVAGWRIFAYTAPTRETCDNKTEPDSKP VCGYPLGLAYNSLKGELYIADAYQGLMMAGQAAGMQATPLATTAEGVPFSATTALDFDPATGIVYFIDKSTKYRISDSILAIESNDMTGRLMQYDTNKRQ VTVLLSNLGFPGGVAVSNDGSFILVTETGQNKTTRFWVRGPKANTSEPFLTNIVRPENIKRTILGKFWIAAMVANQPHFELMVPIRVMAEEIQKEVNGAI IYTTSLEPEYYGRIHMSEVHPVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57030			Calcium-dependent phosphotries...		Lus10009015 [exp]	0	1
					Lus10002413 [exp]	4.9	1.0000
					Lus10001326 [exp]	5.7	1.0000
					Lus10014857 [exp]	8.7	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029383 [exp]	9.2	1.0000
					Lus10027374 [exp]	9.2	1.0000
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10033153 [exp]	9.8	1.0000
					Lus10026755 [exp]	11.5	1.0000
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	12.2	1.0000
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006956 [exp]	12.7	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	12.7	1.0000

Compare expression of checked genes

Lus10009015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.