Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35520 160 / 1e-48 MIS12, ATMIS12 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009652 [exp] 419 / 2e-150 AT5G35520 172 / 2e-53 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055500 [exp] 231 / 1e-76 AT5G35520 205 / 2e-66 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05859 [flax] [poplar] Mis12 Mis12 protein
Representative CDS sequence Show only first row Show all	>Lus10009016 pacid=23173387 polypeptide=Lus10009016 locus=Lus10009016.g ID=Lus10009016.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTTAGCAACGAAATCGCCAATCCAGTTTTCAAGTCGTTCAATCTGGACCCACGAATCTTCATCAACGAAACCCTAAACACCGTAGACGACT TGCTCGACGACGCTTTCCACTTCTATCACGAGCAAGCTTCGGGTTTTCTGAAGACCGAGGAAACGGAACGATCCCAGTTTCTGAAGGAGGGGATTGATCG TGTTCGGTACAAGGTGCAATCTGAGCTGGACATGCGGCTTGGGATGTGGGAGAAGTATTGCTTCCATCACTGTTTCGCAGCTCCCGAAGGCTTCTCCTTT CCCGAAACTGATGAATTTCCAGATCAAAGTTTCAGAAGTGAAGATATGCTTTCTAATCTAGCACTGGATGCACAGTTGGATTCCCTGAGGGAAAGGCTTT CCATGGTGTCAAGGGAAGCGATTGAGCTTAACAAGGAACTCCAAGACTTAGAAAGACAATCTACTACTACCGATCGCTGTACCCAACTCGTTGCTGATGT ATATCCTCCACACGAGCAAGATTCAGGCGATCAACTGTTTCAAGAGATGCTGCAAACGGCAACAGAATTTCGTCAAAGGATACTGAATCTGAGACGTGGA AGACCAGAGGAGGATGCAGAAAGCCATAAATCCAAGAAGATCTGTGACATTACCTCAATTTATGAGAAAGGTCCCGGAATTCGCTTTAAAGAATCAGACA TCTTATCCTGA
AA sequence Show only first row Show all	>Lus10009016 pacid=23173387 polypeptide=Lus10009016 locus=Lus10009016.g ID=Lus10009016.BGIv1.0 annot-version=v1.0 MEEVSNEIANPVFKSFNLDPRIFINETLNTVDDLLDDAFHFYHEQASGFLKTEETERSQFLKEGIDRVRYKVQSELDMRLGMWEKYCFHHCFAAPEGFSF PETDEFPDQSFRSEDMLSNLALDAQLDSLRERLSMVSREAIELNKELQDLERQSTTTDRCTQLVADVYPPHEQDSGDQLFQEMLQTATEFRQRILNLRRG RPEEDAESHKSKKICDITSIYEKGPGIRFKESDILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	0	1
AT1G61000			unknown protein		Lus10012690 [exp]	1.0	0.9180
AT4G24820			26S proteasome, regulatory sub...		Lus10027348 [exp]	3.5	0.8524
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10014848 [exp]	3.9	0.8980
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	4.5	0.8527
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	4.7	0.8986
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	10.8	0.8796
AT4G39380			unknown protein		Lus10033530 [exp]	11.5	0.8526
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	11.7	0.8390
AT4G33800			unknown protein		Lus10033772 [exp]	12.3	0.7662
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	12.4	0.8745

Compare expression of checked genes

Lus10009016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.