Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 327 / 2e-115 Ribosomal protein L23/L15e family protein (.1) AT4G17390 326 / 5e-115 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009653 [exp] 363 / 8e-130 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10004743 [exp] 352 / 3e-125 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10007805 [exp] 352 / 3e-125 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10000165 [exp] 351 / 3e-124 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10028965 [exp] 350 / 4e-124 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141500 [exp] 343 / 1e-121 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 343 / 1e-121 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.013G106800 [exp] 340 / 1e-120 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 340 / 1e-120 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 338 / 4e-120 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF00827 [flax] [poplar] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Lus10009017 pacid=23173358 polypeptide=Lus10009017 locus=Lus10009017.g ID=Lus10009017.BGIv1.0 annot-version=v1.0 ATGGGGGCGTACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTGCAGAGGGTGAGGTGCTGGGAGTATCGCCAGCATC CTTCGATCGTCCGAGTCACTCACCCTACTCGTCCTGACAAGGCTCGCCGATTGGGCTACAAGGCCAAGCAGGGTTACGTAGTTTATCGAGTTCGTGTGAG GCGTGGTGGAAGGAAGAGGCCAGTCCCGAAGGGTATTGTGTACGGTAAACCAACGAACCAGGGAGTTACCCATCTGAAATTCCAGCGTAGCAAGCGATCG GTTGCGGAGGAGCGTGCTGGGAGGAAGCTAGCTGGACTTAAGGTTCTCAACTCATACTGGCTCAATGAGGACTCGACGTACAAGTACTTTGAGGTGATCC TGGTTGATGCTGCTCACAACGCCATCCGAAACGACCCGAAGATCAACTGGATCTGCAACCCGGTGCACAAGCACAGGGAGCTCGGCGGTCTTACCTCTGC AGGGAAAAAGTACAGAGGTCTCCGAGGGAAAGGGTCTCGGTTCCACAAGAACAAGCCCTCGAGGAGGGCTACTTGGAAGAGGAACAACACACTGTCGGTT CGCCGATACCGTTCATAA
AA sequence Show only first row Show all	>Lus10009017 pacid=23173358 polypeptide=Lus10009017 locus=Lus10009017.g ID=Lus10009017.BGIv1.0 annot-version=v1.0 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTHLKFQRSKRS VAEERAGRKLAGLKVLNSYWLNEDSTYKYFEVILVDAAHNAIRNDPKINWICNPVHKHRELGGLTSAGKKYRGLRGKGSRFHKNKPSRRATWKRNNTLSV RRYRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009017 [exp]	0	1
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	1.7	0.8531
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	5.3	0.8486
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	8.3	0.8402
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	11.8	0.8173
AT3G62940			Cysteine proteinases superfami...		Lus10040897 [exp]	15.4	0.8336
AT1G15420			unknown protein		Lus10007894 [exp]	18.8	0.8193
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	19.2	0.8097
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	19.3	0.8015
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	19.5	0.8323
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	20.1	0.8053

Compare expression of checked genes

Lus10009017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.