Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61510 508 / 1e-176 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 129 / 8e-33 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT4G25170 125 / 3e-31 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) AT1G49670 102 / 2e-22 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G61490 87 / 6e-19 Uncharacterised conserved protein (UCP012943) (.1) AT3G56460 82 / 1e-16 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G15090 79 / 1e-15 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G23740 71 / 5e-13 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT5G63620 67 / 1e-11 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT1G26320 57 / 2e-08 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009658 [exp] 447 / 2e-155 AT5G61510 403 / 5e-142 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10009654 [exp] 430 / 6e-147 AT4G25170 174 / 1e-51 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Lus10018450 [exp] 126 / 1e-31 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10011233 [exp] 122 / 3e-30 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10009657 [exp] 102 / 1e-24 AT5G61510 127 / 6e-35 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027904 [exp] 101 / 5e-22 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10002406 [exp] 99 / 2e-21 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10028988 [exp] 96 / 3e-21 AT3G56460 508 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10003691 [exp] 94 / 2e-20 AT3G56460 504 / 1e-180 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233800 [exp] 525 / 0 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G140600 [exp] 497 / 8e-174 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G126300 [exp] 164 / 5e-45 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.003G107400 [exp] 164 / 6e-45 AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.004G036100 [exp] 139 / 2e-36 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.009G103000 [exp] 113 / 6e-26 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.019G065700 [exp] 102 / 2e-23 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.014G057200 [exp] 96 / 5e-22 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1) Potri.001G391100 [exp] 79 / 9e-16 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 79 / 1e-15 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10009018 pacid=23173368 polypeptide=Lus10009018 locus=Lus10009018.g ID=Lus10009018.BGIv1.0 annot-version=v1.0 ATGGGCGGGACCGGCGGAGGAGCTGGCGGTGGCGCCGGAGGCGCCGGAGGAAACATGATGAGAGCCGTGGGGAGAGCCGTCACTCGAGCTGGCGTCGCCG GTCTTCAGGATCCCATTTCCACCACCCCCTCCACCGCCGCCTCATCCAACTCCGCTTCCCCCGCGTCGAGGAAGACCCGCAGGGGGTCTTCCACTTCATC TGGTTCCGGGTCGAGTCTGAAGGCTGAGTTTCCGACTAATTTCGGGTGGACCTCGCCGTTTGGTAGTGGTTCGTACTACGCCAGCGGTGGTCCGTTCGAT GAGTACTCAAGGGAATGGGAGTGGGTCGACGGTGGCGATGGCGATAGCACTTCGTCTGATGATAAGGAAGTGGTTATCTACGGCCTTACTGATGACTTCG GATTCGGGTCGGCTCCTTCTGCTGATGAAGTTCACTCCGCTGTCAATCAACTTTCCCAGTTTGTTGGATCCGGCCGATTCAGTCGGCTAATTCGGGACAA GTATGGCGACGAGGAGAATTCTTATCCAACTGGGTTCGAGCTGGACTGGAAGGAGCCTTCTTCTCCACAGTTCTCCACTACTGCAAGTACCAGAGCTCTG CAGCCTTATGGAAGTGACACGGTGCACAGAGCTTTCCATTTGCTGCAGAGTGACCAATCTGTTCAGAGAATGGTGACTTCTTTATCGTCTGATGCTGCAA TCTGGGATGCTGTAATGAACAACGAGGTGGTTAGAGAGCTTAGGCAGGCTTACTATCCAGACGGCAGGAGCGAGGATTCGACGACTCCAAAGAGTACTGT TAATGACGAGGCGGATGATGTTGACGAAACCAGTGATCTGAACATTGTGCAGTGGATCATTGACAATACTAAAGCAAGAGTGACAGAGTTGATGGAGAAT ATAGCAAAGCTGTTGAACCTGGTCTTCGCTCCTCGTGCCGGAGATGAAAGTGGGGAAAGAGCCGGAATCGCATTCGACGAGAAGGTCACGACTTCGTTGT TCCTCTCTGTGGTGGTTCTGCTGATTGTATTGAAGTGGGAGGATGTGGAGATAGGGCAGCCCAAGGAAGGCGAAATTAGGGTTAAGAACAAGGCTGTTGG GCTTAACTTCATTGATACTTACTTCCGCAAAGGTGTTTACAAAGCTGTCAGTATGCCGTATACGCCAGGCATGGAGGCTGTGGGGGAGGTGATAGATTTG GGAAGTGGAGTGAGTGATGTTAAGGTGGGTGATATCGTTGGATACGCTGGGAATCCGATGGGGTCTTATGCAGAAGAGCAGATACTTCCTGCAGATAGAG CTGTACCTGTTCCTCCTTCGATTGATCCAGTTGTGGCAGCTTCGGTTTTGCTCAAGGGGATGACTGCTCAGTTTTTGTTAAGACGATGTTTCAGGGTTGA ACCAGGGCACACTATCCTTGTTCATGCAGCGGCTGGTGGAGTTGGCTCTCTGCTGTGCCAGTGGGCGAATTCCCTTGGTGCTACTGTTATCGGAACAGTT TCGACCAAGGAGAAAGCTGCACAAGCCAAAGAAGATGGATGCCACCATGTTATAAACTACAAAGAAGAAGACTTTGTCGCCCGTGTCAACGAGATAACTT CAGGCAATGGGGTCAATGTCGTCTACGATTCCGTCGGAAAGGACACAGTTCAGATCCGAGGATACATGGTGATGTTCGGGCAGTCATCAGGCACGCCCGA TCCAATCCCTCTATCCGCCCTCTCTCCAAAGTGCTTGTTCCTGACGAGGCCTTCCCTCATGATGTACACCGTGACCCGGGATGAGCTGCTGGAAACTGCT GCTGATGTGTTCGCCAACATGGCTTCCGGAGCTCTCAAAGTTCGGGTTAACCACACGTACCCTCTGTGCGAAGCTGCCAAGGCTCATTCGGACTTGGAGA GCCGGAAGACCTCTGGTTCCGTCGTGTTGATTCCGTGA
AA sequence Show only first row Show all	>Lus10009018 pacid=23173368 polypeptide=Lus10009018 locus=Lus10009018.g ID=Lus10009018.BGIv1.0 annot-version=v1.0 MGGTGGGAGGGAGGAGGNMMRAVGRAVTRAGVAGLQDPISTTPSTAASSNSASPASRKTRRGSSTSSGSGSSLKAEFPTNFGWTSPFGSGSYYASGGPFD EYSREWEWVDGGDGDSTSSDDKEVVIYGLTDDFGFGSAPSADEVHSAVNQLSQFVGSGRFSRLIRDKYGDEENSYPTGFELDWKEPSSPQFSTTASTRAL QPYGSDTVHRAFHLLQSDQSVQRMVTSLSSDAAIWDAVMNNEVVRELRQAYYPDGRSEDSTTPKSTVNDEADDVDETSDLNIVQWIIDNTKARVTELMEN IAKLLNLVFAPRAGDESGERAGIAFDEKVTTSLFLSVVVLLIVLKWEDVEIGQPKEGEIRVKNKAVGLNFIDTYFRKGVYKAVSMPYTPGMEAVGEVIDL GSGVSDVKVGDIVGYAGNPMGSYAEEQILPADRAVPVPPSIDPVVAASVLLKGMTAQFLLRRCFRVEPGHTILVHAAAGGVGSLLCQWANSLGATVIGTV STKEKAAQAKEDGCHHVINYKEEDFVARVNEITSGNGVNVVYDSVGKDTVQIRGYMVMFGQSSGTPDPIPLSALSPKCLFLTRPSLMMYTVTRDELLETA ADVFANMASGALKVRVNHTYPLCEAAKAHSDLESRKTSGSVVLIP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	0	1
AT1G69330			RING/U-box superfamily protein...		Lus10026648 [exp]	2.4	0.7199
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	2.8	0.7835
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	4.9	0.7365
AT3G05170			Phosphoglycerate mutase family...		Lus10029974 [exp]	6.6	0.6737
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	7.5	0.7172
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	10.6	0.6781
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10043137 [exp]	15.2	0.6739
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	18.2	0.7132
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	19.0	0.6824
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10020685 [exp]	19.6	0.6469

Compare expression of checked genes

Lus10009018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.