Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25180 164 / 1e-48 RNA polymerase III RPC4 (.1) AT5G09380 153 / 1e-44 RNA polymerase III RPC4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009655 [exp] 494 / 8e-178 AT4G25180 169 / 2e-50 RNA polymerase III RPC4 (.1) Lus10019022 [exp] 157 / 1e-45 AT5G09380 191 / 4e-59 RNA polymerase III RPC4 (.1) Lus10000362 [exp] 56 / 6e-09 AT4G25180 69 / 1e-13 RNA polymerase III RPC4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107300 [exp] 189 / 6e-58 AT4G25180 192 / 4e-59 RNA polymerase III RPC4 (.1) Potri.006G143500 [exp] 165 / 4e-49 AT5G09380 231 / 3e-75 RNA polymerase III RPC4 (.1) Potri.005G126700 [exp] 158 / 1e-46 AT5G09380 226 / 2e-73 RNA polymerase III RPC4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF05132 [flax] [poplar] RNA_pol_Rpc4 RNA polymerase III RPC4
Representative CDS sequence Show only first row Show all	>Lus10009019 pacid=23173359 polypeptide=Lus10009019 locus=Lus10009019.g ID=Lus10009019.BGIv1.0 annot-version=v1.0 ATGGACGACGGCGGCCCTCCATCCAACCCCCGCAAGCTCAAGTTCCCACCGAAAAAGCCTGCTCAGAGGACGCCCAAGCTCGCCACTCCCAAACCCGAAG ATGCCAACGAGGCAGCTGAGAAGCGGATGAAAGATTTCAATGACAAAGTCAACAGGCAGGTGACTAGATCAGAGAAGAAAGCTGCTCAAGTTCAAGTGGC ATTCAGTGGAGGACCTTCAACAATATCCATCCGGAAATTCAGATCCCCGAAGGCCGAAACAGGTGATGATCATCATGACAGCAGCAGCAGGAAGAAGCAG AGTTATGAAGTTGCTGCAGCAGCTAGTTCTGATGAGTACTCTCCAGTACCTATGCAAATCGACGCTCCTCCTCGAGAAAGAACTCCGAAGCAATACAAAG AACCATTCGACTGTGAGAATTCTTACTACCCTATTACTCTCCCCTTGAGGAAGCCTTATTCTGGAGATCCGGAGGTGCTCGATGAGGAAGAGTTCGGGAA GGCTGCAATGCAGTCGGAGTATGATGAGAGCTTGATCAACCATGCTGCAGAACTCGGTTTCTCGGAGCATTCCAATGAGGATCCGAAGATGATTCTGTTC AAGTTCCCTCCCAACTTGCCATTGAAGAAACAGTCAAAAAAAACAAAGGCCGGTATGTCGCAGCTGCCTGAAGGATCCATGGGGAAGATGGTGATCTACA AGAGTGGAGCTGTCAAGTGGAAGATTGGAGACGTGCTCTACGACGTTTCGCAAGGTATGGACGGCACATTCGCTCAGGAGGTTGTGGCGATGAACACTAC GAAGAAAGAATGCAGCTCGGTTGGGGAGGTCGAGAAGCATGCTGTGGTTTCTGTTGATGTTGATTCCATCTTAGATTCTGTGGTTAACTTGGACTGA
AA sequence Show only first row Show all	>Lus10009019 pacid=23173359 polypeptide=Lus10009019 locus=Lus10009019.g ID=Lus10009019.BGIv1.0 annot-version=v1.0 MDDGGPPSNPRKLKFPPKKPAQRTPKLATPKPEDANEAAEKRMKDFNDKVNRQVTRSEKKAAQVQVAFSGGPSTISIRKFRSPKAETGDDHHDSSSRKKQ SYEVAAAASSDEYSPVPMQIDAPPRERTPKQYKEPFDCENSYYPITLPLRKPYSGDPEVLDEEEFGKAAMQSEYDESLINHAAELGFSEHSNEDPKMILF KFPPNLPLKKQSKKTKAGMSQLPEGSMGKMVIYKSGAVKWKIGDVLYDVSQGMDGTFAQEVVAMNTTKKECSSVGEVEKHAVVSVDVDSILDSVVNLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	1.0	0.8877
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	1.4	0.8863
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	3.9	0.8635
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	4.0	0.8598
AT3G30775		PDH1, PRODH, PR...	proline dehydrogenase 1, EARLY...		Lus10005114 [exp]	7.7	0.8332
AT5G16650			Chaperone DnaJ-domain superfam...		Lus10000010 [exp]	8.2	0.8311
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10014839 [exp]	8.8	0.8564
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	11.8	0.8537
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	11.8	0.8335
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	12.5	0.8393

Compare expression of checked genes

Lus10009019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.