Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22170 183 / 4e-59 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT4G39730 177 / 1e-56 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G65158 125 / 2e-37 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G07190 46 / 3e-06 ATS3 seed gene 3 (.1.2) AT2G41475 45 / 4e-06 Embryo-specific protein 3, (ATS3) (.1) AT5G62200 40 / 0.0005 Embryo-specific protein 3, (ATS3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037491 [exp] 177 / 1e-56 AT2G22170 221 / 3e-74 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10006497 [exp] 176 / 2e-56 AT2G22170 219 / 1e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10031684 [exp] 39 / 0.0007 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10027387 [exp] 39 / 0.001 AT5G62200 225 / 1e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10019416 [exp] 39 / 0.001 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107100 [exp] 229 / 2e-77 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.005G076900 [exp] 176 / 2e-56 AT2G22170 214 / 6e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.005G077000 [exp] 176 / 2e-56 AT4G39730 218 / 3e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091000 [exp] 175 / 5e-56 AT2G22170 216 / 1e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091100 [exp] 172 / 4e-55 AT4G39730 200 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.006G069800 [exp] 43 / 3e-05 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1) Potri.015G132700 [exp] 42 / 6e-05 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1) Potri.001G193500 [exp] 41 / 0.0001 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1) Potri.018G131800 [exp] 39 / 0.0006 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF06232 [flax] [poplar] ATS3 Embryo-specific protein 3, (ATS3)
Representative CDS sequence Show only first row Show all	>Lus10009020 pacid=23173364 polypeptide=Lus10009020 locus=Lus10009020.g ID=Lus10009020.BGIv1.0 annot-version=v1.0 ATGAGATCTCTCATTCTCTCATTCTTCCTCTTCTCTACTCTCTTCTCCACTCTACTCATTGCTCCCATCCGTTGCGACGATGATGAAAGTGAGTGTGTGT ACACGTTCTACGTCCAGACCGGCACGGGCTTCAAAGCGGGCACTGACTCGAAAATCAGCGTATCGATCGGGGACGCATTGGGCCGATCTGTATGGATGCC AAATCTGGAGTCATGGGGCTTAATGGGCCCGGGCCATGACTACTTTGAAAGGGGAAACGTGGATATATTCAGCGGGCGGGCTCCCTGCATCGGGGCTCCG ATCTGTAGGCTCAATTTGACATCGGACGGGTCGGGGGCCCACCATGGGTGGTATTGCGATTACGTGGAGGTGACCTCCACTGGGGCCCACAAGCAATGCC GCCAGACAATCTTCTACGTGGATCAGTGGCTGGCCACAGACGTGGCGCCGTATCGGCTCACAGCTTTGCTTGATAGTTGCCGGAAGTGGCCGGCGGAGGA TGATGGGAAGCTGGGGGTTAGTGGGAAGTTAACCGTCGGGAACCCGCCGCCGGCGAATGTTGAATTGACTGCTTCTGCCTGA
AA sequence Show only first row Show all	>Lus10009020 pacid=23173364 polypeptide=Lus10009020 locus=Lus10009020.g ID=Lus10009020.BGIv1.0 annot-version=v1.0 MRSLILSFFLFSTLFSTLLIAPIRCDDDESECVYTFYVQTGTGFKAGTDSKISVSIGDALGRSVWMPNLESWGLMGPGHDYFERGNVDIFSGRAPCIGAP ICRLNLTSDGSGAHHGWYCDYVEVTSTGAHKQCRQTIFYVDQWLATDVAPYRLTALLDSCRKWPAEDDGKLGVSGKLTVGNPPPANVELTASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10009020 [exp]	0	1

Compare expression of checked genes

Lus10009020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.