Plant FIBer expression Database

Lus10009021 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51330 351 / 8e-112 DYAD, SWI1 SWITCH1 (.1)
AT5G23610 140 / 2e-35 unknown protein
AT2G01810 43 / 0.0007 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009659
[exp]
989 / 0 AT5G51330 353 / 5e-112 SWITCH1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G106800
[exp]
439 / 3e-143 AT5G51330 432 / 6e-141 SWITCH1 (.1)
Potri.001G126901
[exp]
435 / 1e-141 AT5G51330 413 / 6e-134 SWITCH1 (.1)
Potri.004G137000
[exp]
180 / 9e-49 AT5G23610 276 / 1e-86 unknown protein
Potri.T012300
[exp]
158 / 2e-41 AT5G23610 257 / 2e-79 unknown protein
PFAM info
Representative CDS sequence
>Lus10009021 pacid=23173343 polypeptide=Lus10009021 locus=Lus10009021.g ID=Lus10009021.BGIv1.0 annot-version=v1.0
ATGGCGGACAACCTCCGCCGCTCTTACTTCCCCGCCATGAGCTCACTTCTGCAATCCCCGCCGCCGCCTCCGCCATTGTTACTAATGGAGAATTCGCCGA
CTAATGCTCATGATCCTTCAGAGCACATTAGAGTAGGAGGTTTCTACGAAATCGATCATTCCATGCTTCCGAGTAGATGTCCAGATCAGCTCAAGTGTGT
CCGGGTTGTCATGGTTAACGAGAAAACGAGGATGCGAGTTTCACTGAGGTATCCGAGCATATACTCAGTCCGGGATTACTTCAGCGGCGGCAGCGGATGT
TCGGTGGCGGAGGTGAAGAACATCCCGGCGCTGGTGGAGAAGTGTATGATCGGTTCCGAAGTAGCGGCGGAGGCGCTGTATCGGAGGATTTCGCCGGCTG
AGGTTGTGGAGAAGAAGCGGAGGTGGAATTTCTGGGTGGTTCCTTCTATGGATCCGCCTCAGAATGTTTCGATTGTGAAATCATCTAAAAATAACCGTTC
GTCGCTCTTGACGGAGCTCAAGACTTCCCGGATAGCCGATTGGGGGCTACGCCGGAGAGTTAGATTCTTGAGTCGGTGTGAGGAGGAGGAGAAGCAAGAA
GACGTTACTGATATTACTGAAGAAGAAGAAGAAGAAGCGGATGATGCTGTTCGAGAGAATGAAGAAGAAGACGAAGAGGAGGAGAATCATACACGGAAGC
GGATGAATGGATCGTCGTCAACAATCCAGCTGAGGAAGAGGCCGAAACAAGAGATCAGGAAGAATCAGATTGTGGTTTACAGGCCGAAGAAGAAGAAAGT
GGTGAAGAATTCAATCGACCGATGGTCTGCTGAAAGGTACAAAACGGCTGAGATCAACATGCTGAAGATAATGATAGAAGAAGGGATAGGGTTTGGGAAT
CCGATTTTAAGGGCGGAATTGAGAGCAAAGGCCAGGAAGATGATCGGAGACACAGGTCTGCTGGATCATCTACTGAAACACATGGCGGGGAAAGTGGCTC
CCGGTGGTGAAGTGAGGTTCAGGAGGAGGCATAATGCTGAGGGTTCCATGGAGTATTGGCTGGAGAAGGCTAATTTGGTTGATATAAGGAAGGAAGCTGG
AGTTGCTGATCCTTACTGGATTCCTCCTCCTGGGTGGAAGCCTGGTGATAATCCTTCTCAGAATCCTGTCTGTGCTGCCCAGATCAAGCAACTCAAGGAA
GAAATCGAGAATCTGAGAAGAAGCATTGAAGAACAGAGATCGACGAAGGATGAACTAGCTGTTGTTACCACTCCAATTTCATCAGTTACAAGCTTAAGCA
TTGAACATGAAGGGTTTCGAATCCCACTCCAGGAAATTTTCATTGATCTTACAAACAAGAAGGCCGTAATCGAGGAACAACTGGCAGAAATCTCCAAGTC
ATTATCTGCTATGGAGGAAACAATTTCTGCAACGAAGAGATCAGAAGAAGGGAAAGAGACACCAATCGGAAGTCTGCAAAGCGGGTTCAGGATATACAAT
CCTGGTAATTCGAGCTACTTATTGCCAAGCATGGCGATTTCCTACTCTCCACAAATCCAGCTTGACAGAGGAGGACTTGTTTTCACTCCTCCTTCCGCCT
CATCATCGTCCGCTGTCATATTTCCGCCGCCGGTGCAGTATTCATCATCGCCGCCGGTGCTGAGGCCATTGGCTGAGAGAAGAGCTCTGACTATGAATGT
TCCTTCGATCCTTGCCAGAACTCCTAAAAGTAGAACTCCACTCATCAACCTGAATGAAGATCCCAGCAGTCAAAGCGACGCCGTGTTGTCGTCGTCTCAG
AGTCATGCCCATGTCTCTCCCTGCCCTGTCACATACCATAGAAGAAACCATCATCAGACTCTGACCGCTTCCAACTCTTCCACTTTGGCTGCTGCAAACG
AGATAGCAAATGGATCAAATCAAAGAGACAGCCAGAGCAGGTACAGAGGTGCCTCTTCATCCTTATCTATGGGAGCTTCATCAAGCTTGCCGGCCGGAGT
ACAAGCATGGCTGGCCGTCGGTGAGCCGGATCAGTCGCCGGATGAAGTTTCCAACCGAGGTTAA
AA sequence
>Lus10009021 pacid=23173343 polypeptide=Lus10009021 locus=Lus10009021.g ID=Lus10009021.BGIv1.0 annot-version=v1.0
MADNLRRSYFPAMSSLLQSPPPPPPLLLMENSPTNAHDPSEHIRVGGFYEIDHSMLPSRCPDQLKCVRVVMVNEKTRMRVSLRYPSIYSVRDYFSGGSGC
SVAEVKNIPALVEKCMIGSEVAAEALYRRISPAEVVEKKRRWNFWVVPSMDPPQNVSIVKSSKNNRSSLLTELKTSRIADWGLRRRVRFLSRCEEEEKQE
DVTDITEEEEEEADDAVRENEEEDEEEENHTRKRMNGSSSTIQLRKRPKQEIRKNQIVVYRPKKKKVVKNSIDRWSAERYKTAEINMLKIMIEEGIGFGN
PILRAELRAKARKMIGDTGLLDHLLKHMAGKVAPGGEVRFRRRHNAEGSMEYWLEKANLVDIRKEAGVADPYWIPPPGWKPGDNPSQNPVCAAQIKQLKE
EIENLRRSIEEQRSTKDELAVVTTPISSVTSLSIEHEGFRIPLQEIFIDLTNKKAVIEEQLAEISKSLSAMEETISATKRSEEGKETPIGSLQSGFRIYN
PGNSSYLLPSMAISYSPQIQLDRGGLVFTPPSASSSSAVIFPPPVQYSSSPPVLRPLAERRALTMNVPSILARTPKSRTPLINLNEDPSSQSDAVLSSSQ
SHAHVSPCPVTYHRRNHHQTLTASNSSTLAAANEIANGSNQRDSQSRYRGASSSLSMGASSSLPAGVQAWLAVGEPDQSPDEVSNRG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51330 DYAD, SWI1 SWITCH1 (.1) Lus10009021
[exp]
0 1
AT1G61290 ATSYP124, SYP12... syntaxin of plants 124 (.1) Lus10018441
[exp]
1.4 0.8872
AT1G13710 CYP78A5, KLUH KLUH, "cytochrome P450, family... Lus10015788
[exp]
2.8 0.9306
Lus10009449
[exp]
3.5 0.8009
Lus10005187
[exp]
6.2 0.8386
AT2G38940 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE... Lus10014754
[exp]
6.6 0.6620
AT5G08391 Protein of unknown function (D... Lus10037035
[exp]
6.7 0.7477
Lus10010117
[exp]
7.2 0.8386
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Lus10025408
[exp]
8.1 0.8386
Lus10037199
[exp]
8.4 0.7664
Lus10002152
[exp]
8.8 0.8386

Lus10009021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.