Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35920 1357 / 0 RNA helicase family protein (.1) AT5G04895 752 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G01130 749 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 740 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G58060 525 / 1e-165 RNA helicase family protein (.1) AT1G58050 499 / 1e-156 RNA helicase family protein (.1) AT1G06670 316 / 4e-90 NIH nuclear DEIH-boxhelicase (.1) AT2G30800 310 / 2e-88 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT4G18465 283 / 9e-83 RNA helicase family protein (.1) AT2G35340 288 / 3e-82 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009660 [exp] 1089 / 0 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10034126 [exp] 756 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 755 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 750 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10007938 [exp] 746 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 738 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 738 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10001415 [exp] 329 / 4e-96 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 315 / 6e-91 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068900 [exp] 1434 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G246000 [exp] 803 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 773 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 764 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G117800 [exp] 758 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G222900 [exp] 515 / 3e-162 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 322 / 4e-93 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.014G117900 [exp] 283 / 1e-82 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.015G008700 [exp] 287 / 1e-81 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.015G024400 [exp] 288 / 2e-81 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10009022 pacid=23173332 polypeptide=Lus10009022 locus=Lus10009022.g ID=Lus10009022.BGIv1.0 annot-version=v1.0 ATGTCTTATCGTCCTAACTCCCAAGGCGGAGGTCGCCGCGGTGGTGGCGGCGGCGGAAGAGGAGGCCGTAGAGGCGGAGGAAGAGGAGGCGGAGGTGGAG GAAGAGGCGAGCAACGGTGGTGGGACCCTGTGTGGCGAGCTGAGCGATTGAGGCAGAATGCCGCCGAGCTGGAGGTTCTCGATGAGAATGAATGGTGGAG TAAGATTGAGCAAATGAAGAGCGGGAGGGAGCAGGAGATGATTGTAAAACGGAGTTTCAGCCGCGCTGACCAGGAGAAACTGTCCGGCATGGCTTATCAA TTAGGTCTTCACTTCCATGCATATAACAAAGGGAAGACACTGGTGGTTAGCAAAGTTCCGCTACCTAATTATAGGGCAGATCTTGATGAGCGTCATGGCT CGACTCAGAATGAGATTCGAATGTCCACTGAGACTGAGAGGAGAGTTGGAAGCCTTTTAGGCAACTCAAAAGGTCCGGTTCCTGGCAATGGTTCCAGTTC AAGTTATTCCAATGACTCCGCACAATCATCAAGGACAGTGAAAGTAACAAAACCCATACTTGTCCCATCGCAAAAAGATTCTGCCCAGGAGAAACTTAGT TTGGAATTAAAGCAGAAGCAGGATGAGCTCAGGGCAAGCAATGGCGTGAAGGAGATTCAATCTTTTAGAGAAAAGCTGCCTGCATTTAAGGCCAAAGCTG AATTCCTAAAAGCTGTTACAGAGAATCAGGTACTTGTAATTTCTGGAGAGACAGGTTGGGGCAAAACAACTCAGCTTCCACAATACATATTAGAGGAGGA GATATCTGCACTTCGAGGTGGTACATGCAGCATAATTTGCACACAACCTCGTCGTATATCTGCAATATCTGTTGCTGCCCGAGTATCATCTGAAAGAGGA GAGACGCTTGGTGAAAGTGTTGGTTATCAAATTCGCCTCGAATCAAAACGATCGGCTCTAACTAGGCTTCTATTCTGCACTACCGGTGTGCTGTTGAGAC AGTTGGTTCAGGATCCAAATTTAACTGGCGTCACACATTTGTTAGTTGATGAAATTCATGAGAGAGGCATGAACGAGGATTTTTTATTAATTATTTTACG TGATCTTCTTCCTCGGAGACCAGACCTACGACTCATTCTAATGAGTGCCACAATCAATGCTGACTTATTCTCAAAGTACTTTGGAAATGCACCAACAATT CATATACCAGGATTCACCTTTCCTGTAGCAGAGTTCTTTCTGGAGGATCTCCTGGAGAAAAGCCATTACAAGATACAACCCGAGTCTGAAAATATGCAGG GAAATTCAAGAAGAACCAGAAGAAGAAGAGATCAAGAATCAAAGAAAGATCCATTGGCGGAATTATTTGAGGACATTGACATTGATTCTCACTACAAGAA TTACAGTGCTTCTACACGGCTTTCCCTTGAAGCTTGGACGGGTTCGCAGCTTGACTTGGGTCTGGTCGAGGCCAACGTTGAATATATATGCCGTAGTGAA GGTAATGGTGCAATTCTTGTTTTTCTTACTGGATGGGATGAAATTTCCAAGCTACTAGACAAAATTAAAGGAAACAGACTTCTAGGAGACCAAAGCAAGT TTTTAGTGCTTCCCTTGCATGGTTCAATGCCTACAATCAATCAACGTGAGATTTTTGACCGTCCTCCCCACAACAAACGAAAAATCGTTCTTGCAACAAA TATTGCAGAGAGTAGTATCACCATCGATGATGTTGTGTATGTTATAGACTGCGGAAAAGCAAAGGAAACCAGCTATGATGCTCTAAACAAGCTGGCTTGC CTCTTACCAAACTGGATTTCAAAGGCTTCAGCACACCAGAGACGTGGTCGTGCTGGTCGTGTACAACCAGGGGTTTGTTACAGACTATATCCGAAAGTTA TCCATGATGCGATGCTTCAGTATCAATTACCTGAAATCCTGCGGACGCCTTTGCAAGAGTTGTGCCTACATGTTAAAAGTTTGCAGCTTGGAGCTGTTGG GTCTTTCCTTGGTAAGGCACTCCAGCCGCCAGATGCTCTCTCTGTTCAAAATGCAATTGAACTGCTAAAAACCATTGGAGCTTTGGATGATACTGAAGAG CTTACACCCTTAGGTCGTCACCTATGCACTTTGCCTATGGACCCAAATATTGGAAAGATGCTTCTAATTGGTTCCATCTTTCAGTGCCTCGATCCTGCTT TAACAATTGCAGCTGGTCTTGCACATCGTGATCCGTTCGTCCTTCCAATAGATAGGAAAAATGAAGCAGATGCTGCAAAAAGATCATTTGCTGGTGATTC CTGCAGGTCAGCTGCTGTATCTAATTGTTCGCCTAGTAGGAAGAATCAGCTGCTTGACCACATTGCTCTTGTTAAAGCCTTTGAAGGGTACAGAGAAGCC AAACGTACACGAAGTGAGAGATCATTTTGTTGGGAGAACTTTCTATCACCCGTGACTCTACGGATGATGGAAGAAATGAGGGAGCAGTTTCGTGTCTTAC TGACAGACATCGGCTTTGTCGACAAATCCAAGAGCAATGGTGCTTTCAACCAATATAGTCAAGATATGGAGATGGTATCGGCCGTCTTATGTGCTGGGCT ATACCCAAAAGTTGTACAATGCAAACGGAGAGGAAAGCGCAGTGCATTCTACACGAAAGAGGACGGGAAGGTAGAAATCCATCCGGGTAGACATCCATCC GGCGTCTGTAAATGCAGGAGTCCACCTCTTCCCATTACCGTACATGGTCTACAGCGAAAAGACTATGCACTGCTCCTGTTTGGAGGTAGTCTCACTCCCA GCAAGAATGGCGATGGCATTGAGATGCTTGGCGGGTACCTTCATTTCTCTGCATCGAGGAGCGTGCTGGATTTGATTCGGAAATTGCGTTTGGAGTTGGA CAAGCTCCTGAGTAGGAAGATTGAAGACCCTGGTCTCGACATGTCTGCAGAGGGAAAAGCTGTCGTTTCTGCTGCGGTCGAGTTACTCCACAGTTGCGAC GTGCGCTACTGA
AA sequence Show only first row Show all	>Lus10009022 pacid=23173332 polypeptide=Lus10009022 locus=Lus10009022.g ID=Lus10009022.BGIv1.0 annot-version=v1.0 MSYRPNSQGGGRRGGGGGGRGGRRGGGRGGGGGGRGEQRWWDPVWRAERLRQNAAELEVLDENEWWSKIEQMKSGREQEMIVKRSFSRADQEKLSGMAYQ LGLHFHAYNKGKTLVVSKVPLPNYRADLDERHGSTQNEIRMSTETERRVGSLLGNSKGPVPGNGSSSSYSNDSAQSSRTVKVTKPILVPSQKDSAQEKLS LELKQKQDELRASNGVKEIQSFREKLPAFKAKAEFLKAVTENQVLVISGETGWGKTTQLPQYILEEEISALRGGTCSIICTQPRRISAISVAARVSSERG ETLGESVGYQIRLESKRSALTRLLFCTTGVLLRQLVQDPNLTGVTHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTI HIPGFTFPVAEFFLEDLLEKSHYKIQPESENMQGNSRRTRRRRDQESKKDPLAELFEDIDIDSHYKNYSASTRLSLEAWTGSQLDLGLVEANVEYICRSE GNGAILVFLTGWDEISKLLDKIKGNRLLGDQSKFLVLPLHGSMPTINQREIFDRPPHNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLAC LLPNWISKASAHQRRGRAGRVQPGVCYRLYPKVIHDAMLQYQLPEILRTPLQELCLHVKSLQLGAVGSFLGKALQPPDALSVQNAIELLKTIGALDDTEE LTPLGRHLCTLPMDPNIGKMLLIGSIFQCLDPALTIAAGLAHRDPFVLPIDRKNEADAAKRSFAGDSCRSAAVSNCSPSRKNQLLDHIALVKAFEGYREA KRTRSERSFCWENFLSPVTLRMMEEMREQFRVLLTDIGFVDKSKSNGAFNQYSQDMEMVSAVLCAGLYPKVVQCKRRGKRSAFYTKEDGKVEIHPGRHPS GVCKCRSPPLPITVHGLQRKDYALLLFGGSLTPSKNGDGIEMLGGYLHFSASRSVLDLIRKLRLELDKLLSRKIEDPGLDMSAEGKAVVSAAVELLHSCD VRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35920			RNA helicase family protein (....		Lus10009022 [exp]	0	1
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10031441 [exp]	3.7	0.9055
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	4.7	0.9154
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	9.6	0.9147
AT5G11560			catalytics (.1)		Lus10022143 [exp]	12.4	0.9090
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	12.5	0.9089
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	15.5	0.9077
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	16.4	0.8627
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	18.5	0.9047
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10043473 [exp]	19.1	0.9074
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	20.2	0.8968

Compare expression of checked genes

Lus10009022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.