Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48810 543 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 280 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 276 / 2e-82 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 271 / 8e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 246 / 2e-72 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 241 / 1e-70 RPF2 rna processing factor 2 (.1) AT4G20090 241 / 2e-70 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 238 / 1e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 241 / 2e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 226 / 3e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009661 [exp] 839 / 0 AT3G48810 440 / 3e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 276 / 3e-82 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 250 / 1e-72 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 247 / 9e-72 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 244 / 3e-71 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 238 / 1e-68 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 241 / 4e-68 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 233 / 9e-67 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 233 / 7e-66 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148700 [exp] 689 / 0 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 271 / 2e-80 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 264 / 2e-78 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 250 / 2e-73 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 248 / 2e-73 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 244 / 4e-72 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G111600 [exp] 243 / 5e-71 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050300 [exp] 241 / 6e-71 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 238 / 7e-70 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 240 / 8e-70 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009023 pacid=23173373 polypeptide=Lus10009023 locus=Lus10009023.g ID=Lus10009023.BGIv1.0 annot-version=v1.0 ATGTATCTGAAAGAAGGACGACGCTCTCTGTTATTAACCTCGAAATCATTCACACGATCACTTGCATTTGCTATCAAAGAATCCGAGGTGCTCAACCAGT TAGAGAACGAGCCAAGCAGCTCACTCGCATTAAATTACTTCAAGTCGATTACCAATTCGAAATCCTTCAAACAAACTGGTCTCACCTACAGAACCATGAT CAGACGGCTGGGCGATTCCGGCGACGTCGACGGAATACAGAGCCTCCTTCAGCAGATGAAGCTGGAAGGAATCCCTTGCAATGCAGATTCCTTCACGAAT CTGATTAACACTTGTGTAAAATCAGGCTCGGCTGATCAGGCGTTGAAGATGCTCTACAGGGTCGATGAATTCGGATGCAGGCCGACAGTTAAAATGTACA ATCTGATCCTGGACGCGTTGCTTGGTGAGAACAAGTTCGAGATGGTCAGTTCGACTTACAGGAACATGAAGGCCGATATGATCGAGCCGAATGTGTACAC TTACAATACGCTGTTGAAGGCTCTCTGTAAGAACAAACGAATTGAGGCGGCTCGAAATCTGCTCTTACAAATGTCGAGCAAAGGTTGTTTCCCCGATGAT GTTAGCTATACTACTGTGGTGTCGTGTATGTGTGATGCAGGCATGGTGGAGGAAGCGTATCAGGAGCTCGAGAGGAAATCATCGAGTTTGTTTCGGTTTC GGCCATCTGTGCCTGCTTATAATGCTGTGATGAAAGGTTTCAGGAAGGAAGGTAGAGTTAGGGAGGTGGTTCAGTTGTTGGACCGGATTTCGGAAGCTGG ATTGGTTCCGAATGTGGTCAGTTACTCTACGGTTATAAGCACGCTTTCGGACACGAGGAATGTTGACCGGAATGTTGATCATGCGTTCGCTGTGTTTGGT AAGATGTTTGTGAGAGGGTGCAGCCCGAATCTCCACACGTTCTCGTCGTTGATGAAAGGTTGTTTCGCGGAAGGGAGGGTAAACGAAGCGCTCCGTTTGT GGGATCGGTTGGATCTTGAACCGAATGTTGTTTTGTACAACACTCTTATCCATGGTCTCTCCTCTTGTGGCAGGATGGTTGAAGCAGTTGCTGTTTTCGA AGATATGCAACAGAATAACGGATGTTCTCCGAGCATTGCAACGTACGGTGCTCTAATTGATGGATTTTCGAAATCAGGGGATCTCCGTGGCGCAACTGAG ACATGGAACAAGATGATGGCCGACGAGGGATGTGTTGACATGGTCAACGTCGTTGTTTATACATCCATGGTGGATGTTCTCTGCAGACACTGGATGTTTG ACGAAGCATACGCTCTTATAGAGCGTATGAGACGATCGAGCTGCCATCCGAACACGGTTACGTTCAATACATTGATCGGAGGTTTGGCTGGAAGTGGAAG AACAGAGCGGGCTCGAACGATTTTCGAGGAAATGGGGCGATACGGGTGTATCCCTAATGTTACAACTTACAACGAACTGCTGGGTGGTCTTCTCAAATCG GAGGGGACGAAAGAGGGGCTCGAGTTTTTCAAGGAGATGGATTCGAATGGGATTGTGAAGCCGGATTTAGTTACTTATAACTCGGTTCTGCGTTCAGTTT CTCGTTCCGGTATGCTTGTTTTGGTTCTGCAGATTTTCGGAAAGATGGTAAGTTCCGGGATAGAGCCGGATAATTTTACGTTTAACACTGTGATTGATGC TTACTCTAGGCAAAGGAGAGTTGGCTTTGCAATCCGGATTCAGGACAGATTGAGTTGCAGAGGCTACTGGTGTCCGGATATAGTTGCTTACAATAGTCTT CTTTGGGGGATTTGTCGTTGGTTCGGACCTGAAAAGGCCGGTTCGTATCTCGAGAAGATGATGGTTAATCATGGTACGAACCCTAATTTTGCTACATGGA ATGTTTTAGTCAGGGGATTGTTTAGTAGCTTAGGGAATCTGGGATCAGTTTCCTTATTTGATCATCTGATTTCTGATGAATGA
AA sequence Show only first row Show all	>Lus10009023 pacid=23173373 polypeptide=Lus10009023 locus=Lus10009023.g ID=Lus10009023.BGIv1.0 annot-version=v1.0 MYLKEGRRSLLLTSKSFTRSLAFAIKESEVLNQLENEPSSSLALNYFKSITNSKSFKQTGLTYRTMIRRLGDSGDVDGIQSLLQQMKLEGIPCNADSFTN LINTCVKSGSADQALKMLYRVDEFGCRPTVKMYNLILDALLGENKFEMVSSTYRNMKADMIEPNVYTYNTLLKALCKNKRIEAARNLLLQMSSKGCFPDD VSYTTVVSCMCDAGMVEEAYQELERKSSSLFRFRPSVPAYNAVMKGFRKEGRVREVVQLLDRISEAGLVPNVVSYSTVISTLSDTRNVDRNVDHAFAVFG KMFVRGCSPNLHTFSSLMKGCFAEGRVNEALRLWDRLDLEPNVVLYNTLIHGLSSCGRMVEAVAVFEDMQQNNGCSPSIATYGALIDGFSKSGDLRGATE TWNKMMADEGCVDMVNVVVYTSMVDVLCRHWMFDEAYALIERMRRSSCHPNTVTFNTLIGGLAGSGRTERARTIFEEMGRYGCIPNVTTYNELLGGLLKS EGTKEGLEFFKEMDSNGIVKPDLVTYNSVLRSVSRSGMLVLVLQIFGKMVSSGIEPDNFTFNTVIDAYSRQRRVGFAIRIQDRLSCRGYWCPDIVAYNSL LWGICRWFGPEKAGSYLEKMMVNHGTNPNFATWNVLVRGLFSSLGNLGSVSLFDHLISDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	0	1
AT3G18310			unknown protein		Lus10025089 [exp]	1.7	0.8242
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	3.0	0.8342
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Lus10034736 [exp]	8.1	0.7965
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	8.7	0.8305
AT1G35660			unknown protein		Lus10028705 [exp]	9.5	0.7995
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	11.0	0.7842
AT2G34930			disease resistance family prot...		Lus10016384 [exp]	13.1	0.8199
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	15.3	0.8148
AT5G65920			ARM repeat superfamily protein...		Lus10005500 [exp]	18.7	0.7984
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	22.4	0.8086

Compare expression of checked genes

Lus10009023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.