Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04620 551 / 0 BIO4, ATBIOF biotin 4, biotin F (.1.2) AT3G48780 72 / 3e-13 ATSPT1 serine palmitoyltransferase 1 (.1) AT5G23670 69 / 2e-12 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48790 66 / 1e-11 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009662 [exp] 136 / 2e-38 AT5G04620 76 / 4e-17 biotin 4, biotin F (.1.2) Lus10036011 [exp] 71 / 1e-12 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10016717 [exp] 67 / 1e-11 AT5G23670 885 / 0.0 long chain base2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126700 [exp] 597 / 0 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2) Potri.012G104500 [exp] 74 / 7e-14 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.015G103800 [exp] 69 / 3e-12 AT5G23670 829 / 0.0 long chain base2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10009024 pacid=23173370 polypeptide=Lus10009024 locus=Lus10009024.g ID=Lus10009024.BGIv1.0 annot-version=v1.0 ATGGATGCCAACAATGACAGCTCCTGGGACGAATGGCTGGACGAGGCAATCTCCAAGCTCGAATCCACCAAGCTCCTCCGTTCGCTGAGACCTATTACCC TTAACAAGCAACACCCTCCCTGTTCCTCATCACCAGTACTCGACCATGCCTACAAGGTGTTCGACGAAATGCAGCAATGGGATCGGTCCTCTGTCGAAGT CTCCGTTTCCCATTCCACTTTCAACAGCTGGCTCCGTAACGCCGCCAGTGTTGGAGAAGAGGATTCTTGTAGTGGTGTGGAAGAGAAGAGTGGGAAGTTC AAGAAGCTGCTTTTGTTCTCTGGAAATGATTACTTGGGGCTAAGCTCACATCCCACCATTGCCAATGCAGCTGCTAAGGCAGCTCAAGATCATGGAATGG GGCCAAGAGGGTCTGCTCTGATCTGTGGCTACACTAATTACCATAGACTGCTTGAATCCTCCTTGGCTGACCTGAAAAAAAAAGAGGACTGTCTACTGTG TCCTACAGGGTTCTCCGCCAATATGGCGGTAATGGTGTCGATCGGAAGCTTAGGCTCTCTTTTGGCTTCATCTCGGAAGAAACCTCGACCGGAGGAGAAG ATTGCTGTGTTTTCGGATGCTCTGAATCATGCTTCGATAATTGATGGTATTCGTCTTGCTGAACGACAGCAGTCGATTCAGGTCTATGTGTATAGGCACT GTGACATGTCCCACCTTAGTTCTTTACTATCGAACTGCTCGCTGAAGAAGAAGGTTGTCGTGACTGATAGTTTGTTCAGTATGGACGGGGACTTTGCGCC GATGGCTGAGCTGGCGAACCTCCGGAAGAAGCACGGGTTCATATTGATCATCGACGATGCTCATGGAACATTTGTTTGCGGCAAGGATGGTGGCGGTGTT GCTGAGCAGTTCAACTGCGAAAATGATGTCGATATATGCGTTGGGACGCTGAGCAAAGCTGCCGGTTGCCACGGAGGGTTCGTAGCCTGCAGTAAGAGGT GGAAGCAACTCATACAATCAAGAGGCCGGTCGTTCATATTCTCGACCGCTATACCGGTTCCTTTTGCTGCTGCCGCCCATGCTGCTGTTACCGTGGCTAG AAAGGAAGCTTGGAGAAGAAGGCAAGTCTGGAAACGTGTACAGGACTTCCGGGATCTTACCGGGATCCCTATCTCGAGCCCTATAATCTCGCTCGTCGTA GGCAGCGAGGAGAGAGCTCTGCGGGCCAGCAGGTACCTGCTGGAGTCTGGTTTTCACGTCACTGCAATCCGCCCCCCTACCGTGCCTTCAAATTCGTGCA GGTTGAGAGTGACTCTGAGTGCAACGCACACGATCGATGATCTGAAGAAGCTGACCGCTGCAATTTCGCGGTGCATTAGTCTCGAAGACATCAGCAGCAA CTTGAATGGACTAGCCAGACTCTAG
AA sequence Show only first row Show all	>Lus10009024 pacid=23173370 polypeptide=Lus10009024 locus=Lus10009024.g ID=Lus10009024.BGIv1.0 annot-version=v1.0 MDANNDSSWDEWLDEAISKLESTKLLRSLRPITLNKQHPPCSSSPVLDHAYKVFDEMQQWDRSSVEVSVSHSTFNSWLRNAASVGEEDSCSGVEEKSGKF KKLLLFSGNDYLGLSSHPTIANAAAKAAQDHGMGPRGSALICGYTNYHRLLESSLADLKKKEDCLLCPTGFSANMAVMVSIGSLGSLLASSRKKPRPEEK IAVFSDALNHASIIDGIRLAERQQSIQVYVYRHCDMSHLSSLLSNCSLKKKVVVTDSLFSMDGDFAPMAELANLRKKHGFILIIDDAHGTFVCGKDGGGV AEQFNCENDVDICVGTLSKAAGCHGGFVACSKRWKQLIQSRGRSFIFSTAIPVPFAAAAHAAVTVARKEAWRRRQVWKRVQDFRDLTGIPISSPIISLVV GSEERALRASRYLLESGFHVTAIRPPTVPSNSCRLRVTLSATHTIDDLKKLTAAISRCISLEDISSNLNGLARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009024 [exp]	0	1
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	1.0	0.8965
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10033805 [exp]	14.0	0.8691
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	16.1	0.8914
AT5G66150			Glycosyl hydrolase family 38 p...		Lus10025960 [exp]	21.4	0.8852
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	21.9	0.8847
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	22.3	0.8891
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	24.4	0.8844
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	24.4	0.8807
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	25.2	0.8732
					Lus10030118 [exp]	28.4	0.8824

Compare expression of checked genes

Lus10009024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.