Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23340 131 / 1e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51310 129 / 8e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 65 / 6e-12 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G50960 64 / 1e-11 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT4G21200 60 / 2e-10 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT3G19010 59 / 5e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G25300 57 / 4e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G55290 56 / 4e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 55 / 1e-08 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT4G21690 55 / 1e-08 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009663 [exp] 276 / 1e-92 AT4G23340 358 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10018836 [exp] 160 / 2e-47 AT5G51310 348 / 7e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017799 [exp] 99 / 2e-26 AT5G51310 108 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030941 [exp] 71 / 3e-14 AT1G17010 258 / 2e-84 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10029081 [exp] 61 / 2e-10 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013135 [exp] 59 / 7e-10 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10012912 [exp] 59 / 8e-10 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10023311 [exp] 57 / 3e-09 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10032930 [exp] 56 / 1e-08 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106900 [exp] 142 / 1e-40 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G159500 [exp] 136 / 1e-38 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G128100 [exp] 136 / 2e-38 AT4G23340 458 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G201000 [exp] 72 / 2e-14 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G418200 [exp] 64 / 1e-11 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G176600 [exp] 61 / 1e-10 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.004G022800 [exp] 58 / 9e-10 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 56 / 5e-09 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G200900 [exp] 56 / 5e-09 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G057400 [exp] 55 / 1e-08 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10009025 pacid=23173377 polypeptide=Lus10009025 locus=Lus10009025.g ID=Lus10009025.BGIv1.0 annot-version=v1.0 ATGTCTCAATCTGTGACTGTGAAGCTCCCTGTGTTCGACATCTCGGTCCCCTTCTCGACATCCGCCATTGATGACCTCTCCGCAGCTTGCAAGGAGTGGG GGTTCTTCCACATAACCAACCATGGAGTTTCCAAGGAGCTCTACAGCAAGGTCAGAGCTTTCTCCATGGAGGATCTCTTCTCTCAGCCATTGGAGATGAA GATCAGAGCTGGACCGAGCTCCGATGTCAAGTCCTACACTCCGCATTTCATCGCTTCGCAGTTCTTCGAGAGCTTTCGTATCTCCGGTCCCGGTTTTTTG GACTCTGTTCACGAATCGGCTCGAGTTGTTCGTGGTCCGGTTTCGAGCTATCCGGAATTAAGCCAGGCAGTGGAAGAGTACGGGAGGAAAATGACGAATC TATGCGAAGCCATAGTAAAAACTATACTAGCAAACGAAGTGTTGAACATCGGAGACATGTTGGAAGCATGGAGCAATGGGGAGCTGAGGTCATCTGAACA CAGGGTTATCCTGAAGAGACCTGTTGAAAGGTTCTCTCTGGCATTTTTTTGGTGCTTTGAGGACCAAAATGTCATTTTGGCGCCCGAGGAGGTTGTAATT GGGAAGAGGAGAAAGTATAGGGAGTTTGTTTGTAGAGAGTACTTGAGTTATAGGGAGACTAGTGTCGAGGGGAATTTTGATAAGGTTGGGTTCACTGTTA GGGATTTTGCTAGGCTCGATGGATTGGTCGTGGATTTGTGA
AA sequence Show only first row Show all	>Lus10009025 pacid=23173377 polypeptide=Lus10009025 locus=Lus10009025.g ID=Lus10009025.BGIv1.0 annot-version=v1.0 MSQSVTVKLPVFDISVPFSTSAIDDLSAACKEWGFFHITNHGVSKELYSKVRAFSMEDLFSQPLEMKIRAGPSSDVKSYTPHFIASQFFESFRISGPGFL DSVHESARVVRGPVSSYPELSQAVEEYGRKMTNLCEAIVKTILANEVLNIGDMLEAWSNGELRSSEHRVILKRPVERFSLAFFWCFEDQNVILAPEEVVI GKRRKYREFVCREYLSYRETSVEGNFDKVGFTVRDFARLDGLVVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	0	1
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	2.8	0.9296
					Lus10004308 [exp]	3.2	0.8840
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	4.1	0.8737
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	7.2	0.9047
AT4G33590			unknown protein		Lus10001351 [exp]	7.7	0.8652
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	12.6	0.8758
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	12.6	0.9220
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	19.4	0.9057
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	19.9	0.8968
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	23.4	0.8841

Compare expression of checked genes

Lus10009025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.