Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61500 562 / 0 ATATG3 autophagy 3 (APG3) (.1) AT3G07525 42 / 0.0002 ATG10, ATATG10 autophagy 10, autophagocytosis-associated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009664 [exp] 641 / 0 AT5G61500 568 / 0.0 autophagy 3 (APG3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107000 [exp] 564 / 0 AT5G61500 568 / 0.0 autophagy 3 (APG3) (.1) Potri.001G126500 [exp] 555 / 0 AT5G61500 542 / 0.0 autophagy 3 (APG3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0097 [flax] [poplar] TypeIII_Chap PF03987 [flax] [poplar] Autophagy_act_C Autophagocytosis associated protein, active-site domain
Representative CDS sequence Show only first row Show all	>Lus10009026 pacid=23173328 polypeptide=Lus10009026 locus=Lus10009026.g ID=Lus10009026.BGIv1.0 annot-version=v1.0 ATGGTGCTGAAACAGAAGCTCCACGATGCATTCAAAGGCACGGTGGAGAGGATCACCGGACCACGCACCGTCTCCGCCTTCAAGGAGAAGGGCGTACTCA GCGTCACCGAGTTCATCCTCGCCGGCGATAACCTTGTCTCTAAGTGCCCCACCTGGTCCTGGGAATCCGGTGAGCCAAGCAAAAGGAAGCCTTACTTACC TCCTGAAAAGCAGTTTCTAATCACTCGAAACGTTCCTTGTCTACGTAGAGCTGCCTCTCTCGAGAAAGAATATGCAGAAAGCGGGGGTGAGGTTTTACTC GACAATGATGATAATGACGGCTGGCTTGCGACTCATGGGACGCCAAAAGAGAAGAATGTTGGTGAAGAGGACAATGTGCCTTCAATGGAGGCCTTGGAAA TTAGCCGAAAGGGTCCCATCCAAGCAATCCCATCGTACTTTGGGGATCAGGAAGAGGATGATATCCCTGATTTGGCCGATTATGATGAGTCTGACAATCT CGCTGAAGCAGATCCTGCAACTCTCCAATCTACCTATCTTGTAGCACACGAACCCGATGATGATAACATTCTGCGGACACGAACTTATGATGTCAGCATC ACATATGACAAATATTATCAGACTCCTCGCGTATGGCTTACTGGATATGATGAGTCGAGGATGCTTTTGCAACCAGAACTGGTTCTCGAAGATGTCAGTC AGGACCATGCACGTAAAACGGTTACTATCGAAGACCATCCTCATCTACCCAGGAAGCATGCTTCGGTCCATCCATGTAAACACGGAGCTGTCATGAAGAA AATTATCGATATTCTTATGTCTCGTGGAGTCGAACCCGAAGTCGACAAGTATCTTTTCTTGTTCTTGAAATTTGTGGCATCAGTAATCCCTACCATCGAG TATGACTACACCATGGACTTTGATCTCGGTAGCTCAAGCAGCTAG
AA sequence Show only first row Show all	>Lus10009026 pacid=23173328 polypeptide=Lus10009026 locus=Lus10009026.g ID=Lus10009026.BGIv1.0 annot-version=v1.0 MVLKQKLHDAFKGTVERITGPRTVSAFKEKGVLSVTEFILAGDNLVSKCPTWSWESGEPSKRKPYLPPEKQFLITRNVPCLRRAASLEKEYAESGGEVLL DNDDNDGWLATHGTPKEKNVGEEDNVPSMEALEISRKGPIQAIPSYFGDQEEDDIPDLADYDESDNLAEADPATLQSTYLVAHEPDDDNILRTRTYDVSI TYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQDHARKTVTIEDHPHLPRKHASVHPCKHGAVMKKIIDILMSRGVEPEVDKYLFLFLKFVASVIPTIE YDYTMDFDLGSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	0	1
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	1.4	0.9474
AT1G43130		LCV2	like COV 2 (.1)		Lus10028564 [exp]	2.0	0.9438
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	2.8	0.9400
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	3.5	0.9302
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	9.0	0.9144
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10008658 [exp]	10.4	0.9013
AT1G44770			unknown protein		Lus10034500 [exp]	12.4	0.9407
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	12.6	0.8858
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	15.4	0.9191
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10004334 [exp]	15.5	0.8525

Compare expression of checked genes

Lus10009026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.