Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73860 350 / 1e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 335 / 8e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 300 / 9e-85 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 289 / 1e-81 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 241 / 5e-65 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT5G27000 238 / 1e-64 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 216 / 1e-57 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 217 / 2e-57 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 196 / 3e-51 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G72250 155 / 4e-38 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009666 [exp] 1070 / 0 AT1G73860 260 / 3e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009667 [exp] 697 / 0 AT1G73860 342 / 2e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031784 [exp] 425 / 9e-140 AT1G73860 199 / 3e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031783 [exp] 393 / 4e-123 AT1G73860 269 / 4e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024628 [exp] 307 / 1e-86 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032264 [exp] 303 / 2e-85 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 282 / 2e-78 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 278 / 4e-77 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009668 [exp] 249 / 1e-74 AT1G73860 203 / 2e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056700 [exp] 361 / 2e-106 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 355 / 2e-104 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 331 / 3e-95 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G104000 [exp] 321 / 7e-92 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 270 / 2e-74 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 262 / 6e-72 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.013G011500 [exp] 243 / 8e-66 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 239 / 2e-64 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.006G048650 [exp] 229 / 2e-64 AT3G10310 503 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 224 / 8e-60 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10009028 pacid=23173348 polypeptide=Lus10009028 locus=Lus10009028.g ID=Lus10009028.BGIv1.0 annot-version=v1.0 ATGAGCACATCAAAGTCAAAGTCAGAGTTTTTAGCGAGACAATATGGGAGAGTCAACAGTGCAAAACATCTTTCAACAGACTGGGATTGCTCCCAATCAG CTTCCTCCTTATGTGATTCTGATGAGACTGAAGAGAGGAAGCTAGCAGTGTTGATAGAGTGGCTAAACACCATTCTACCTGATCTGAAGCTGCCACTAAA GGCTTCAATTGATGAACTCAGAGACTGCTTAGCTGATGGCACTGTCCTTCTTCAAATCTTGAGGAAAGTCAAACCAAGATCCTTCACTAAAGATCTAGAA GGGGTTTTGGAAGCTGAGATAGTATCACCAAGCCAAAATGTACACCTATTCTTGGACAACATTGATGAAAGGGGCATCCCCAAGTTCGAGATGGGAGACT TGGAGAAGGGCTCGATGAAGAGAGTGGTGGATTGCCTTCTGTCAATAAGAGTAAGGTACCCAACAGGGAGGAACAACTTCTCATCAGTAAATGGTAGAAT GACTAGAAGTGGTAGCCTAAGGGAGTTCTCACCTTACCAAAGCCTTCACCTTGGTACATTCTCATCCTCACTCTCGTCTCCTGGTGCCGAAAGGCAGCCA CTCTACTCCGAGTCGAAATTCCAGCAGTTCTTGCGTACCAGTCCCGCCCTTTCAGAGTCATCTGCCGCGTGGATGCACCACGCTGGACACCGATTCCACG AGGTGTTCCAGGTCAGGCAAGGTCGATACGCTGACCTGTCGCCTTCGAAGATATCGGAGATGATGAAGTCAACCAGCTTAGATAATGCTCCAACTCAGTC TCTTCTAAGTGTTGTCAATGGCATCTTGGATGAAAGCATTGACAGAAAGAACGGCGAAATCCCTCATAGGGTAGCTTGCTTGCTGAGGAAGGTAGTGCAA GAGATTGAAAGGAGGATATCAACTCAAGCAGAACACTTAAGAACACAAAACAACCTTTTCAAGGCTAGAGAGGAGAAATACCAGTCCAGAATTAGGGTTC TTGAGACACTTGCTTCCGGTACAGGTGAAGAACCTGCGGGAGTGAAGGTGAAGATGGAAGATAAAAGCAAGGTGAATGAAGAGATATCAAAGTTGATGAA AGAAAAGGAACAAGAAAGCATTGAGCTTGCAAGGGTAAGGCAAGAGCTGGAAACAACCAAGACCGTATATGATGATATGGTGAAGCTAATGAGACAAAAG GATGAGACAACAACTAGTTTCAAACTCTCATCTTCAAACCAGCAGCAGAGAACGAATGCCGAAATCTCAGCGTTGCAGCAGGAAGTTGCAGCAGGGAAGA AAGAGCTCAACCACATAGTTGACTCGGTTAGGGAGACAGACCGGACGAAGAATGAGCAGACCAATGCTGAGGTTCTAGCATTGCGGAAGGAACTGGCTTC GACGAGAAAGGAGCTTGATGGAATTTTCGGTTCAATGAAGGAAAAGGACCAAATGAATAAAGTTGGCGGTGATAATGTGGTTAGATTATTGAAGGAGAAA GAGGAGATGAGTCTTCAAGTTGTGGCATTGAAGCTAGAGCTCGAAAGGGTTTTGAGGCAAGGAAATGTCGGTAATGATGTCGATGTGGTTAGATTAGTGA AGGAGAAAGATGATTTGAGTGTTCAAGTTATGGCATTGAAGCAGGAGCTTGAAAGGGTTTCGAGACAAAGCATTAATGTCGGTGCTGCTGATGTTGTTAG ATTAGTGAAGGAGAAAGAGGAGATGAGTCTCCAAATCGCGACATTGAAGCAAGAACACGAAAGAAAAAAGCAATTAGGACATGGAAATGTGGAGAATGGT GATGTGGTTAGATTAGTGAAGGAGAAAGAGGACATGAATGGTCAAATCGCGACATTGAAGCAAGAGCTCGAAAGGGTAAAGGGATCACAGGGGGATGTTG ATAATGATGTCGACGTGGCTAGATTAGTGAAGGAGAAGGAGGAAATGAGCCTAAGACTGTCCAAATTGCAGCAAGAAATGGAGACATTAACACAAGGAAA TAACAATGATGCTGATGTGGCTAGATTGATGAAGGAAAATGAAGAAATGAGCCTAAAGATCTCATCTTTGCAGCAAGAAGGAGACTTGGTTAGCAAGCAA CTCACAACTCTGCAGCAAGAACATGAGGAAATGGTCAGATCAATGAAGGAGAAAGACCAAACTAGCCATGATCAGCTCTCAAAATTGCAGCAAGAGATGG ATTCGGCAAAAAGGGAGCTCGACGGCATGGCTAGATTGGTGAAGGAGAAAGACCAGGCAAACCTTAGACTTGCCATGTCAATCCAAGAGCTAGAGGTGGC TAACAAGGCAAAAGAACAGAACTACTTGCAACTTGAGGGTCAACTCAAAGAGGTTCAGAGTCAACTGATTAGGTCAAAGGAAAAAATGGAGTCAGATCAA CAGATTTGGAGTAAGAAACAGAAGAGTGTTCTCAAGTCTGTTGATTTGCAGTTCCATACCCTTCATGAGCTAAGGTTTTCATCCACCAGCATCAAAGAAG AGGTTCTACAAGTGCAGCAAGACTATACAGAGAAGTTCCTCAGCCTAAGAGTGAAGTTCAAGACATTGGTGGATGCAAGTGAGAACTACTACTTGGTTCT TGCCGAGAACAGGAGGCTATTCAATGAGCTACAAGACTTAAGAGGTAACATCAGAGTGTACTGCAGAGTGAGGCCATTCTTGCCAGGGCACCAGAGCGGT TCAAATAAGTCAGTTGTGGAGCACATTGGTGACAAAGGGGAGCTGGTAGTTGGGAACCCTGCCAAAGCTGGGAAAGATGCTCGAAAGTTGTTCCGGTTCA ACAAGGTGTATGGTCCTGGAGCTACTCAAGGTGAGGTTTACTTGGACACACAGCCATTGGTGCAGTCTGTGCTTGATGGGTACAATGTCTGCATATTTGC TTATGGGCAGACTGGTTCAGGCAAAACTTATACTATGTTGGGTCCTAATGGAGCAAAAGAAGAGGAGTGGGGAGTCAACTACAGAGCTCTAAAGGACCTC TTCAACATGTCAAAAGGCAGAAGTGACTCCATATCGTATGAAGTCGGTGTTCAGATGGTCGAGATCTACAACGAACAAGGCGGTGAGCTCCACCGCCATG AACGAGAGGAGCAGTCGGGCCCACCACGGCCTGAGCGTCCACGCGGACAAGCAAAAACCTTAATGTTCGTACAGCTGAACCCAGACGCAAGCTCCTACTC GGAAAGCCTAAGCACGCTGAAATTCGCCGAGAGAGTCTCGGGAATCGAGCTCGGAGCAGCGAAGAGCAACCCGGGGAGGGACGTCAAGGAGCTAATGGAG CAGCTTGCATCGCTCAAGGACACTATAGCCAACAAGGACGAGGAGATCGAGAGGCTACAAGTGCTCAAGGTCGCCGGCGCCGGCGCACACCCTCCGCCGG GGAGGCTGCGGACGAGGCAGTCGTTGGATAAGGACTCGGAGATGGGTGGTGGCGATTCCGAGAGTAGGTATAGTGATAATTATATGTCGGACGGGGAAGC TTCGGTCGGGACGGAGCCAGAGTCCGTGCATGACGACGGCGGAGGAGGGGGGAGAGCTTCGTCCGCCGATAAGCGTACAGGGGCGAAAGGGTTGACTAAG ACGAGGAGCTTGCAGAGGCTGGGGGGGGGGAAGGCGGCGGGGGGGGGGGGGAGGCTAGGCCGTCGACGGTGTCGAGAGACCATCTCAAAGGATCAACAAG TGTTAAGAAAGCTACCGCCGGCAGCAGCACCTCCACCTTACAGAAGCCGATGA
AA sequence Show only first row Show all	>Lus10009028 pacid=23173348 polypeptide=Lus10009028 locus=Lus10009028.g ID=Lus10009028.BGIv1.0 annot-version=v1.0 MSTSKSKSEFLARQYGRVNSAKHLSTDWDCSQSASSLCDSDETEERKLAVLIEWLNTILPDLKLPLKASIDELRDCLADGTVLLQILRKVKPRSFTKDLE GVLEAEIVSPSQNVHLFLDNIDERGIPKFEMGDLEKGSMKRVVDCLLSIRVRYPTGRNNFSSVNGRMTRSGSLREFSPYQSLHLGTFSSSLSSPGAERQP LYSESKFQQFLRTSPALSESSAAWMHHAGHRFHEVFQVRQGRYADLSPSKISEMMKSTSLDNAPTQSLLSVVNGILDESIDRKNGEIPHRVACLLRKVVQ EIERRISTQAEHLRTQNNLFKAREEKYQSRIRVLETLASGTGEEPAGVKVKMEDKSKVNEEISKLMKEKEQESIELARVRQELETTKTVYDDMVKLMRQK DETTTSFKLSSSNQQQRTNAEISALQQEVAAGKKELNHIVDSVRETDRTKNEQTNAEVLALRKELASTRKELDGIFGSMKEKDQMNKVGGDNVVRLLKEK EEMSLQVVALKLELERVLRQGNVGNDVDVVRLVKEKDDLSVQVMALKQELERVSRQSINVGAADVVRLVKEKEEMSLQIATLKQEHERKKQLGHGNVENG DVVRLVKEKEDMNGQIATLKQELERVKGSQGDVDNDVDVARLVKEKEEMSLRLSKLQQEMETLTQGNNNDADVARLMKENEEMSLKISSLQQEGDLVSKQ LTTLQQEHEEMVRSMKEKDQTSHDQLSKLQQEMDSAKRELDGMARLVKEKDQANLRLAMSIQELEVANKAKEQNYLQLEGQLKEVQSQLIRSKEKMESDQ QIWSKKQKSVLKSVDLQFHTLHELRFSSTSIKEEVLQVQQDYTEKFLSLRVKFKTLVDASENYYLVLAENRRLFNELQDLRGNIRVYCRVRPFLPGHQSG SNKSVVEHIGDKGELVVGNPAKAGKDARKLFRFNKVYGPGATQGEVYLDTQPLVQSVLDGYNVCIFAYGQTGSGKTYTMLGPNGAKEEEWGVNYRALKDL FNMSKGRSDSISYEVGVQMVEIYNEQGGELHRHEREEQSGPPRPERPRGQAKTLMFVQLNPDASSYSESLSTLKFAERVSGIELGAAKSNPGRDVKELME QLASLKDTIANKDEEIERLQVLKVAGAGAHPPPGRLRTRQSLDKDSEMGGGDSESRYSDNYMSDGEASVGTEPESVHDDGGGGGRASSADKRTGAKGLTK TRSLQRLGGGKAAGGGGRLGRRRCRETISKDQQVLRKLPPAAAPPPYRSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63640			P-loop nucleoside triphosphate...		Lus10009028 [exp]	0	1
					Lus10005514 [exp]	4.4	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	6.2	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	7.5	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	8.7	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	9.7	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	10.7	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	11.5	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	12.3	1.0000
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007110 [exp]	12.6	0.7102
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	13.1	1.0000

Compare expression of checked genes

Lus10009028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.