Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73840 83 / 3e-17 ESP1 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009670 [exp] 397 / 2e-137 AT1G71800 192 / 7e-58 cleavage stimulating factor 64 (.1) Lus10014474 [exp] 75 / 1e-16 ND 43 / 4e-06 Lus10017923 [exp] 53 / 2e-07 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10033878 [exp] 53 / 3e-07 AT5G59540 308 / 4e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10014814 [exp] 52 / 3e-07 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 50 / 1e-06 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10006055 [exp] 48 / 8e-06 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056200 [exp] 196 / 4e-59 AT1G73840 224 / 2e-69 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) Potri.002G061200 [exp] 47 / 2e-05 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009030 pacid=23173322 polypeptide=Lus10009030 locus=Lus10009030.g ID=Lus10009030.BGIv1.0 annot-version=v1.0 ATGGCGGGAAAGCCGAAGCCCGCCGACGTCCTGGCGGCGGACTTCGCCGGGATGACGAAGAGCCAGCTCTACGATATCATGTCTCAGATGAAGGCAAGTC CTCCATTCATCCTTCACTCTTGCTTTCACTCTCCCCTTCTCTTCTCTTCTCTTCTCTTCTCATCTTCCTCCCCAACCTTGATTGAGCAGAACAGGCAGCA AGCGAGGGAGATACTCATCCAGAACCCTCCATTAACGAAGGCCCTTTTCCAGGCTCAGATCATGTTAGGAATGGTGCAACCTCCTCCAGTGATTCCTGCA ATCCAGCCTACGGTATCGCAGCAGCCTCCACAATCAGTCCCGGCCTCACAGGCTCCAAACATTCCAAAGCCGCAACCAGTTTCATCTCAGGGACTTCATC AAAACAGGAAACATCACCAGAATCAACCTGCTGGCCCAATATCTTCCTCTGTTCCTCCTGTAAATCTTCCATCTCAATCTGCGCCGATGCCAAAGGGACA TGTTAATGCTCAGGTGACAGGAATGCAAACTTCTCACATTCCTAGTAATATGCCTCCCCAGCCTCATCAACCCCAATTGGCTCCTAGTCAGTTGCAACTG CCACCAAGTGGAATCTCTCATGTGCTGCCGCAACCACCAATGCTGGCACAACCTAGACCACCACATTCTATGTCTGGCTTCCATAATCAGTATCAACAAA TGGGATCAAATTCGGGCTTCCAACATGGTGGCGGTCATCAACATCCTTCACAGTCCATGTTTCATTCAGGCAATAGAACTCAACATCCGGGGCCTTCATA TCCTCAAGGACAACAACCGGTTCCAAGCCAGCCCCCACCACAATCCCTTTATCAGGGTGGAGGTTCTCATTTGACATCGGATTTCAATCAGGGTAGCACC TCAATGCAAGTTGATCGTGGATCATCATCCAGTTGGCCACCTGGCCTTCCGGATAGCTCGACTATGGGTCAAGCTCCTGCAAATCAACCAGCTCGCTCTG CTGCGTTAAGCCCGGATATGGAGAAGGCACTACTCCAACAGGTAATGAGCCTGACTCCAGAGCAGATCAATCTCCTGCCTCAAGAGCAGAGGAATCAAGT GCTTCAGCTGCAGCAGATGCTCCGCCAATGA
AA sequence Show only first row Show all	>Lus10009030 pacid=23173322 polypeptide=Lus10009030 locus=Lus10009030.g ID=Lus10009030.BGIv1.0 annot-version=v1.0 MAGKPKPADVLAADFAGMTKSQLYDIMSQMKASPPFILHSCFHSPLLFSSLLFSSSSPTLIEQNRQQAREILIQNPPLTKALFQAQIMLGMVQPPPVIPA IQPTVSQQPPQSVPASQAPNIPKPQPVSSQGLHQNRKHHQNQPAGPISSSVPPVNLPSQSAPMPKGHVNAQVTGMQTSHIPSNMPPQPHQPQLAPSQLQL PPSGISHVLPQPPMLAQPRPPHSMSGFHNQYQQMGSNSGFQHGGGHQHPSQSMFHSGNRTQHPGPSYPQGQQPVPSQPPPQSLYQGGGSHLTSDFNQGST SMQVDRGSSSSWPPGLPDSSTMGQAPANQPARSAALSPDMEKALLQQVMSLTPEQINLLPQEQRNQVLQLQQMLRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	0	1
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	1.0	0.9622
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	2.4	0.9396
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	2.8	0.9300
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	3.0	0.9157
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	3.5	0.9301
AT1G73380			unknown protein		Lus10031316 [exp]	3.7	0.9184
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10027873 [exp]	3.9	0.9247
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	8.5	0.9194
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	9.9	0.9118
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	10.5	0.8905

Compare expression of checked genes

Lus10009030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.