Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18390 867 / 0 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 471 / 6e-153 ATCFM3B CRM family member 3B (.1) AT4G29750 459 / 3e-149 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 459 / 3e-147 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G23070 442 / 6e-142 ATCFM3A CRM family member 3A (.1) AT5G16180 392 / 1e-124 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G25440 107 / 1e-24 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G13070 96 / 4e-21 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT2G28480 96 / 8e-21 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 87 / 1e-17 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009671 [exp] 1497 / 0 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 464 / 9e-149 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 468 / 3e-147 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10039467 [exp] 449 / 1e-143 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10027610 [exp] 434 / 2e-139 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10033576 [exp] 405 / 3e-130 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10039451 [exp] 230 / 5e-67 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10017618 [exp] 162 / 5e-43 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009566 [exp] 109 / 4e-25 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056100 [exp] 973 / 0 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 494 / 8e-162 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 493 / 8e-160 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.017G116700 [exp] 425 / 1e-136 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 228 / 4e-68 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G176900 [exp] 110 / 2e-25 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 103 / 1e-23 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 96 / 8e-21 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 87 / 2e-17 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 54 / 6e-07 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10009031 pacid=23173389 polypeptide=Lus10009031 locus=Lus10009031.g ID=Lus10009031.BGIv1.0 annot-version=v1.0 ATGAACTTGGCAACTGCGAAGCTATCAGAACTCTCACTCTCCTCTCTCAGAAAACCATTCAGCTGCTCCTCCTCATTACGAACCAACAGATTCTCCAAAA CCCAGAACCCTAAATCCAGAACTTCCAATTCGCCCAATTGGGTCTCCAAGTGGCCGCAGAGAAAGAACAATTCAGCTCGGGATTCCCCCAGAAGAAGAGA GGTTATAAAGCCGCCGCAGCCACCGTCGGCGGACGACGAGAAAGCTAAGTACTTAGCTCGGGGCAGAGGGCATAATGCGGTGGAGAGAATCGTGCTCCGG TTGAGGAACTTGGGTTTGGCCACCGACAACGATGAAGAACAACAACAATTGGAAAAGGAAGAAAATTTGGTTGGGGAGAATTTAATGGCGGTTAACGGTG ATGAGAGGCTGTCGGACTTGCTGAAGAGGGAGTGGATACGGCCGGACACGATTCTGGAGGATGGATTTGACGGCGAGGAGACGGCGTTACCGTGGGAGAG AGAGGAGAGATTGTTGGTGGAGGGAGATGGAGGGAAAGAGGAGAGGAAAATGAGGAGGGTCAAGGCTCCGACTTTGGCGGAGTTGACTATTGAGGATGAG GAGCTGAGGAGGCTGAGGAAGAATGGGATGACGTTGAGGGAGAGGATCAATGTTCCGAAAGCCGGGATTACGGAAGAGGTTTTGGAGAAGATTCATGATA AGTGGAGGAAAGATGAGCTTGTTAGGCTCAAGTTTCATGAGTTTCTGGCTCATGACATGAAGACTGGCCATGAGATCGTTGAGCTAACCGGTTATATTAA TCATCAGCGTCGTACAGGAGGGCTAGTTCTATGGAGAGCAGGAAGTGTTATGATAGTTTACAGAGGAAATAACTATGAAGGACCGAAATCTAGTTCACAA TCTATTACTACAGAAGCAGATTCTATGTTGATCCCAGATGTATCTTCTTCGAAAAAAGATGAGGCAGCAACGTCGAATCCAGATTCAGTACCGGTTGCGA GGCTTCCTGAACAAGCTGAGAACTTGACAGAAGAGGAAATCGAGTATAACAGCCTGTTGGACGGATTAGGTCCCCGTTACGAGGCATGGTGGGGTACCGG AGTGCTCCCTGTGGATGCTGATTTGCTCCCTCAGAAAGTTGAAGGTTACATGACACCTTTCAGGCTTCTCCCGACCGGAATGAGGCCACGACTTACGAAT ACCGAGATGACTAACATGCGGAAACAAGCCAAGTCGCTTCCCTGCCATTTCGCTCTCGGGAGAAACAGACATCATCAAGGCCTGGCTGCTGCAATACTCA AGCTCTGGGAGAAAAGCCTGCTTGTCAAGATTGCGGTGAAACGAGGCATACAGAACACGAATAACAAATTGATGGCTGATGAGATCAAGCAATTAACAGG AGGCGTCCTTCTGCTGAGAAACAAGTATTACATAGTCTTATATCGTGGGAAGGATTTCTTGCCGGAAAGTGTAGCTGCGGAGTTAGCTGAGAGGCAAGAG ATGACTAAACAGATTCAGGACACGGAGGAGAAGCTACGAATCAAGCTTGAGGAGGCATCAGTTGGAGAAAATAATAATAACCACCATCTTGTAGCATCCG AGAGGCAGGAAATAGCCGAACCAATTCAAGAGAAAGAAACAAGACGAGAGGCATCGCCATCCGGCGGAGGAAGTGCCCTTGCAGGGACGTTGGCGGAGTT TTACGAGGCTCAAGCACGATGGGGGAGAGATACGTCTGCTGAAGAACGCGAAAAGATGGTCGAGGAAGCTTCCAAGGCTAGAACTGCTAGGCTCGTCAGG CGAATCGAGCATAAGCTATATGCAGCTCAAGCGAAGAAGCTTAGAGCGGAGAAACTGCTATCAAAGATTGAAGCCTCGATGGTACCTGCTGATCCGGATT ACGACAAAGAAACCATTACTGACGAGGAGCGGATCATGTTCCGGAAAATCGGGCTAAGAATGAAGCCGTACTTACCTATGGGAATCCGGGGCGTTTTCGA TGGGGTTATCGAGAACATGCATTTGCATTGGAAGTACAGGGAGCTTGTGAAGCTGATAACCAAGCAGAAGACGATGACTTTTGTTGAAGATACAGCTAGA CTGCTGGAATACGAGAGTGGTGGGATACTAGTCGCTATAGAGAGGGTATCAAAAGGCTACGCGCTAATTTACTACCGAGGGAAGAACTATCGCCGCCCTA TTAGCCTTCGACCGAGGAATCTCCTGACGAAGGCGAAAGCTTTGAAGCGTTTTGTAGCTATGCAACGCCACGAGGCTCTAAGTCAGCACATATCTGAACT GGAGCAGAATATACAACGGCTCAATGCGGAAATCGGTATATCCGATGACGAAAGTTTCATCAGCCAGAACGCAGAGGCGCCCAAGCAGTTCGATCGCGAC TCCGACTTCACTGATGACGAGGACGAAACTTTGTATTCATCGTCTGATGAGGATGATAGCGATGACGACGGAGAGGAGGAACTTGATTGGAACGATGAAG ATTTCGAGTTTTCTGACTCGGAGAATAACTGA
AA sequence Show only first row Show all	>Lus10009031 pacid=23173389 polypeptide=Lus10009031 locus=Lus10009031.g ID=Lus10009031.BGIv1.0 annot-version=v1.0 MNLATAKLSELSLSSLRKPFSCSSSLRTNRFSKTQNPKSRTSNSPNWVSKWPQRKNNSARDSPRRREVIKPPQPPSADDEKAKYLARGRGHNAVERIVLR LRNLGLATDNDEEQQQLEKEENLVGENLMAVNGDERLSDLLKREWIRPDTILEDGFDGEETALPWEREERLLVEGDGGKEERKMRRVKAPTLAELTIEDE ELRRLRKNGMTLRERINVPKAGITEEVLEKIHDKWRKDELVRLKFHEFLAHDMKTGHEIVELTGYINHQRRTGGLVLWRAGSVMIVYRGNNYEGPKSSSQ SITTEADSMLIPDVSSSKKDEAATSNPDSVPVARLPEQAENLTEEEIEYNSLLDGLGPRYEAWWGTGVLPVDADLLPQKVEGYMTPFRLLPTGMRPRLTN TEMTNMRKQAKSLPCHFALGRNRHHQGLAAAILKLWEKSLLVKIAVKRGIQNTNNKLMADEIKQLTGGVLLLRNKYYIVLYRGKDFLPESVAAELAERQE MTKQIQDTEEKLRIKLEEASVGENNNNHHLVASERQEIAEPIQEKETRREASPSGGGSALAGTLAEFYEAQARWGRDTSAEEREKMVEEASKARTARLVR RIEHKLYAAQAKKLRAEKLLSKIEASMVPADPDYDKETITDEERIMFRKIGLRMKPYLPMGIRGVFDGVIENMHLHWKYRELVKLITKQKTMTFVEDTAR LLEYESGGILVAIERVSKGYALIYYRGKNYRRPISLRPRNLLTKAKALKRFVAMQRHEALSQHISELEQNIQRLNAEIGISDDESFISQNAEAPKQFDRD SDFTDDEDETLYSSSDEDDSDDDGEEELDWNDEDFEFSDSENN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	0	1
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	2.2	0.9524
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	3.0	0.9421
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	3.2	0.9470
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	6.0	0.9295
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	6.3	0.9419
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10040987 [exp]	6.9	0.9217
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	8.0	0.9377
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	8.7	0.9415
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	8.8	0.9414
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	8.8	0.9392

Compare expression of checked genes

Lus10009031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.