Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18370 878 / 0 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G05500 86 / 4e-17 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 84 / 2e-16 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 82 / 1e-15 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G53590 74 / 3e-13 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61720 64 / 5e-10 Ca2+dependent plant phosphoribosyltransferase family protein (.1) AT5G48060 62 / 1e-09 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G03370 62 / 2e-09 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT4G00700 61 / 3e-09 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 61 / 3e-09 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009672 [exp] 1466 / 0 AT3G18370 840 / 0.0 C2 domain-containing protein (.1) Lus10006193 [exp] 82 / 1e-15 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013710 [exp] 79 / 8e-15 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005578 [exp] 77 / 4e-14 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026192 [exp] 76 / 6e-14 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042475 [exp] 76 / 9e-14 AT3G14590 741 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10038117 [exp] 73 / 6e-13 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10031816 [exp] 71 / 2e-12 AT4G11610 513 / 1e-176 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 64 / 4e-10 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046700 [exp] 1129 / 0 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.012G056000 [exp] 1126 / 0 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.018G025000 [exp] 87 / 1e-17 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 78 / 1e-14 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 77 / 2e-14 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G379800 [exp] 76 / 5e-14 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G210801 [exp] 65 / 1e-10 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 65 / 2e-10 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 65 / 2e-10 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 64 / 3e-10 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10009032 pacid=23173380 polypeptide=Lus10009032 locus=Lus10009032.g ID=Lus10009032.BGIv1.0 annot-version=v1.0 ATGAGGAAAGTCGGTGGGATGAGAGTGGATGAGATTGTGGAAGCTTTCAATGCTCTTTATGAGGAGAAGAAGCCATTTCTGCCCTTAGTGATCCCTTTGG TGTTGTTGGTTTGGGGCATTGAGAGATGGGTTTTCTCCCTTTCCAACTGGGTTCCTCTTGCTGTTGCTGTTTGGGCTCTTCTTCAGTATACGAGTCATCA GAAGAGAATACTTGTGGAAGATCTGAACAAGAAGTGGAAACGGGTTATATTGAGCACCTCGCCAACTACAGCTGTAGAGCACTGTGAGTGGCTGAACAAG ATGTTCATCGAGTTCTGGCCTAACTACTTTAACCCAAGGCTTTCGACAAGGTTCTCGCACATGGTCGAGAAACTCTTGAAGGAGCGCAAACCAAAGCTCA TTGAATGGGTTGAACTACAAGAGTTTTCATTAGGCTCGTCCCCACCTAGCTTGGGACTGAATGGTACTCGGTGGGCGACTTCAGGAGATCAGCGAGTTAT GCACATGGGTTTTGATTGGGACACATGTGACATGAGCATCATGCTGCTGGCCAAGCTGGCTAAGCCATTAGGAACTGCTCGGATCGTAGTTAACAGCCTG CAGATCAAGGGCGATCTTCTGTTGATGCCAATATTGGACGGGAGAGCAATTCTGTACTCATTCGTGTCAACCCCTGAAGTAAGAATCGGAGTCGCCTTTG GAAGTGGTGGAAGCCAGATTCCCGCCACAGAACTCCCGGGTGTCTCATCTTGGTTGGTCAAGCTTTGCTCTGACACCTTAGATAAAACGATGGTTGAACC TCGACGACGTTGTTTCTCCTTACCAGCTGTAGACTTGAGAAAGAAGGCTATTGGAGGGATCATACATGTTACCGTTGTTTCAGCTAGTAAAATGTCTCGG GGTAGCTTTAAGGGGAGTCCGTCAAGAAAGCAGCTATGTTCAGAAGATCATTTTGATGAGAAAGATTTGCAGACGTTCGTGGAAGTCGAACTCGGTCAGT TAACGAGGAGAACAAGTGTAAGACCGGGATCAAGTCCTAAATGGAACTCGACTTTCAACATGGTGTTGCATGAAGAAACCGGAATCTTGAAGTTCAACCT CTGCAACTGTAACCCTGGAAGTGTCAAGTATGACTACCTGGCAAGTTGCGAGATCAAGATGAAGTACGTGGCAGATGATTCAACCATTTTCTGGGCGATC GGTCCAGATTCTAGTATAATAGCTAAACAAGCTGAGTTCAGTGGACGAGAAGTTGAGATGATAGTTCCCTTTGAAGGGCCGAGCACCGGGGAGTTGGCTG TCAAGCTTGTGATGAAAGAGTGGCAATTCTCGGACGGGACTCATAGCTTGAACAAGTACAAGAGCAGCTCTAGGCAATCTGTGGATGGATCTTCGATCAT TCCGTCGAGAACAGGAAGGAAGATCAATCTAACTGTCTTGGAAGGGAAAGATTTCACCGCAAAAGAACGATCTGGCAAGTGTAACGCCTACGTTAAGTTA CAGTATGGAAAGGCTGTCCAGAGGACTAAGACTTCACCGTCTCCGAATCCTACGTGGAATCAGAAGTTCGAGTTCGATGAGATTGGTGGCGACGAATACA TTAAGCTTAAATGCTACTCTGAAGAGGTCTTTGGAGATGAAAGCATCGGCAGTGCGAGGGTGAATTTGGAAGGGTTATTGGAGGGTTCGGTAAAGGACGC TTGGATTCCTCTTGAGAAAGTAAATTCTGGAGAGCTCCGGCTGCTAATCGAAGCAGTCAAAGTTGAAGACGAAGGAGCCAAGAGTTCGATGTCATTTGGT GGGTGGATTGAACTTGTGGTCATCGAAGCAAGGGATCTTATCGCCGCTGATCTCAGGGGGACAAGCGATCCATATGTCCGGGTGCAATATGGGAACTTCA AGAAGAGAACAAAGGTGCTATTTAAGACTCTAACCCCTCAATGGAATCAAACCTTAGAGTTCCCCCACGACGGAAGCCCTCTGGAGTTACATGTCAAAGA CCATAATGCTTTGCTACCTGGTTCCAACATAGGTGACTGTGTTGTAGAGTACCAAAGGCTGCCTCCAAACCAAACGGCTGACAAGTGGATACCTCTGCAA GGCGTTAAAAGAGGGGAGATACACATCCGAGTCACTAGGCGAGTCCCCGAACAACCAAAGAGATCCACCTCAGAGTCCGAACCGAGTTTGAGCAAATCAC ACCAGATTGCTGGCCAGTTGAAGCATATGATGGTAAAGTTTCGATCTTTGATGGAAGGAGGGAACCTCGACGAACTATCTATAGCTATGAGCGAGATGGA AAGTGTAGCAGATGGTCAAGAAGAGTACATGGTGCAGCTCGAGACCGAGCAGATGCTTCTGCTGAATAAGATCAAGGAGCTCGGTGAAGAAATGAATAGC TCTTCACCAGTCTTAGAAAGACGATCATCCGCTGCGGTTTAA
AA sequence Show only first row Show all	>Lus10009032 pacid=23173380 polypeptide=Lus10009032 locus=Lus10009032.g ID=Lus10009032.BGIv1.0 annot-version=v1.0 MRKVGGMRVDEIVEAFNALYEEKKPFLPLVIPLVLLVWGIERWVFSLSNWVPLAVAVWALLQYTSHQKRILVEDLNKKWKRVILSTSPTTAVEHCEWLNK MFIEFWPNYFNPRLSTRFSHMVEKLLKERKPKLIEWVELQEFSLGSSPPSLGLNGTRWATSGDQRVMHMGFDWDTCDMSIMLLAKLAKPLGTARIVVNSL QIKGDLLLMPILDGRAILYSFVSTPEVRIGVAFGSGGSQIPATELPGVSSWLVKLCSDTLDKTMVEPRRRCFSLPAVDLRKKAIGGIIHVTVVSASKMSR GSFKGSPSRKQLCSEDHFDEKDLQTFVEVELGQLTRRTSVRPGSSPKWNSTFNMVLHEETGILKFNLCNCNPGSVKYDYLASCEIKMKYVADDSTIFWAI GPDSSIIAKQAEFSGREVEMIVPFEGPSTGELAVKLVMKEWQFSDGTHSLNKYKSSSRQSVDGSSIIPSRTGRKINLTVLEGKDFTAKERSGKCNAYVKL QYGKAVQRTKTSPSPNPTWNQKFEFDEIGGDEYIKLKCYSEEVFGDESIGSARVNLEGLLEGSVKDAWIPLEKVNSGELRLLIEAVKVEDEGAKSSMSFG GWIELVVIEARDLIAADLRGTSDPYVRVQYGNFKKRTKVLFKTLTPQWNQTLEFPHDGSPLELHVKDHNALLPGSNIGDCVVEYQRLPPNQTADKWIPLQ GVKRGEIHIRVTRRVPEQPKRSTSESEPSLSKSHQIAGQLKHMMVKFRSLMEGGNLDELSIAMSEMESVADGQEEYMVQLETEQMLLLNKIKELGEEMNS SSPVLERRSSAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	0	1
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	2.0	0.8781
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10036860 [exp]	4.4	0.8320
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10040901 [exp]	5.7	0.8156
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	6.8	0.8833
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	10.4	0.8406
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Lus10000463 [exp]	10.5	0.8280
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	15.7	0.8740
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	19.5	0.8298
AT5G06270			unknown protein		Lus10029413 [exp]	20.9	0.8538
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	20.9	0.8580

Compare expression of checked genes

Lus10009032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.