Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18360 76 / 3e-16 VQ motif-containing protein (.1) AT1G68450 56 / 6e-10 PDE337 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) AT1G21326 48 / 1e-06 VQ motif-containing protein (.1) AT3G18690 46 / 5e-06 MKS1 MAP kinase substrate 1 (.1) AT1G21320 44 / 4e-05 nucleotide binding;nucleic acid binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042794 [exp] 52 / 2e-08 AT1G21326 74 / 9e-17 VQ motif-containing protein (.1) Lus10029768 [exp] 52 / 3e-08 AT1G21326 79 / 4e-18 VQ motif-containing protein (.1) Lus10012286 [exp] 46 / 7e-07 AT1G21326 50 / 8e-09 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055900 [exp] 87 / 5e-21 AT3G18360 73 / 2e-15 VQ motif-containing protein (.1) Potri.015G046600 [exp] 86 / 1e-20 AT3G18360 81 / 2e-18 VQ motif-containing protein (.1) Potri.010G123700 [exp] 62 / 2e-11 AT1G68450 64 / 9e-13 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.002G070600 [exp] 50 / 2e-07 AT1G21326 76 / 3e-16 VQ motif-containing protein (.1) Potri.005G189300 [exp] 50 / 3e-07 AT1G21326 75 / 4e-16 VQ motif-containing protein (.1) Potri.005G057800 [exp] 49 / 5e-07 AT3G18690 124 / 2e-35 MAP kinase substrate 1 (.1) Potri.006G199300 [exp] 46 / 1e-06 AT1G68450 60 / 1e-12 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.007G110100 [exp] 45 / 1e-05 AT3G18690 119 / 3e-33 MAP kinase substrate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10009033 pacid=23173352 polypeptide=Lus10009033 locus=Lus10009033.g ID=Lus10009033.BGIv1.0 annot-version=v1.0 ATGCGGGTGAGGGCCACCACCGCCAATCTCGACCAATCCCCGCCGTTGAAAGTCAACAAGGACTCACACACTATCAAGAAACCGTCCGCATATAATAACT CCCCCTCCCCCGCCTCCGCCGCCAAACCACCGCAGCGCCAGCACCCGGTGATCATCTACACGCACTCCCCCAAAGTCATCCACACCCAACCTCGCGATTT CATGGCCCTCGTCCAGAAGCTCACCGGGATGACGCGATCAGACGAGCCTGACCCGGTGGTCAGACCAGAGAAATCGGTCGACAGCGGCAAACCGGATTCG CCGGCGGAGGAGGAGAGCCAGAGGACCGGCGGAGGAGGAGGGGATGACAATGACTCGTCGTCGGTGATTACGGAGGAGAACAATTGCGGGAGTACGGAGC AGGCGAACTCGAATAATAATTGCTTTGTGTCGTCTTCGTCGATTTTTGATTCGCCGGCGGCGAATCAAAATAATAATAACAACAATCCGTATTTGACGAG CTTGCCGTCGTTTCAAGGGTCGGCGGCGGATCAGTTTTTGTGTCCTAATAATCAGGCGGCGTTCTTTAACTACCCGGATCCGTTGTTCTTGGGGACGATG AGGAGCTCGTCGATTTCGTCGTCGTCGTCGAGCTTGGACGCCATTAATGACTTCCGCGATTTCTGA
AA sequence Show only first row Show all	>Lus10009033 pacid=23173352 polypeptide=Lus10009033 locus=Lus10009033.g ID=Lus10009033.BGIv1.0 annot-version=v1.0 MRVRATTANLDQSPPLKVNKDSHTIKKPSAYNNSPSPASAAKPPQRQHPVIIYTHSPKVIHTQPRDFMALVQKLTGMTRSDEPDPVVRPEKSVDSGKPDS PAEEESQRTGGGGGDDNDSSSVITEENNCGSTEQANSNNNCFVSSSSIFDSPAANQNNNNNNPYLTSLPSFQGSAADQFLCPNNQAAFFNYPDPLFLGTM RSSSISSSSSSLDAINDFRDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18360			VQ motif-containing protein (....		Lus10009033 [exp]	0	1
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	5.4	0.7305
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10016827 [exp]	10.0	0.7265
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005281 [exp]	13.2	0.6510
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	17.7	0.7081
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	21.8	0.7093
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	25.5	0.6697
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	37.8	0.6812
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	49.2	0.6545
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	54.3	0.6627
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	58.5	0.6476

Compare expression of checked genes

Lus10009033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.