Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73830 178 / 2e-55 bHLH bHLH050, BEE3 BR enhanced expression 3 (.1.2) AT1G18400 171 / 1e-52 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) AT1G25330 149 / 2e-44 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 133 / 9e-38 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G07340 132 / 4e-36 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 127 / 7e-35 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT5G48560 127 / 6e-34 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 126 / 1e-33 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G23690 123 / 3e-33 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 120 / 4e-33 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009673 [exp] 384 / 4e-137 AT1G73830 204 / 1e-65 BR enhanced expression 3 (.1.2) Lus10038939 [exp] 205 / 6e-66 AT1G73830 193 / 9e-61 BR enhanced expression 3 (.1.2) Lus10013052 [exp] 129 / 2e-34 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 128 / 4e-34 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10033562 [exp] 122 / 4e-34 AT1G18400 121 / 5e-34 BR enhanced expression 1 (.1) Lus10026008 [exp] 124 / 5e-34 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 124 / 5e-34 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10017602 [exp] 122 / 5e-34 AT1G18400 122 / 7e-34 BR enhanced expression 1 (.1) Lus10023562 [exp] 123 / 1e-33 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046300 [exp] 196 / 3e-62 AT1G18400 192 / 3e-60 BR enhanced expression 1 (.1) Potri.012G055700 [exp] 188 / 2e-59 AT1G73830 216 / 1e-69 BR enhanced expression 3 (.1.2) Potri.017G115300 [exp] 145 / 1e-42 AT1G25330 151 / 4e-45 HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G099400 [exp] 141 / 4e-41 AT1G18400 152 / 7e-45 BR enhanced expression 1 (.1) Potri.012G104900 [exp] 129 / 2e-35 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G248500 [exp] 131 / 4e-35 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 129 / 2e-34 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G148900 [exp] 127 / 7e-34 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 127 / 1e-33 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.015G104200 [exp] 124 / 1e-33 AT5G50915 163 / 9e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009034 pacid=23173376 polypeptide=Lus10009034 locus=Lus10009034.g ID=Lus10009034.BGIv1.0 annot-version=v1.0 ATGGCTGAGTCTTCATTCCCGCTACTGGAAATGGATTACCAAATCCCACAGTACTTCACCGAGCTCAACCAATTCCACACCTTCACCCAAGTCCCACCTA GTAATTTCTTCACTACCCATGATCGGTTCGACCCAGTATTCGACCCGACCCATCATGGTGGAGTTGTTGTTGAAGAGAACATTAAGAAGAGGAAATGGTT ATCAATGGAGGATGCTAGCAGCTCCATGAACAACACCAACAACAACATCAGTTCAGCTTCTGATGATCAGAGTGGCTGTTGCAACAATAGATCAAGAGGA GGAAGGAAGAGAGTGAGAAGCAATCACGGAGATGGTGAGGAGGAGAAGTTGAAGGAGGTTGTTCATGTTAGGGCTAGAAGAGGTCAAGCCACTGATAGCC ATAGTCTAGCCGAACGGGTGAGAAGAGGCAAAATCAACGAGAAGCTCAAGTGCTTACAAAACATCGTTCCCGGATGCTATAAGACGATGGGGATGGCGGT GATGTTGGACGAGATAATTAACTATGTACAATCGCTTCAAAATCAAGTCGATTTCCTATCAATGAAGCTCACAGCAGCAAGCACATACTATGATTTCAAC GCAGAGGAAGAAGCTACACTACAGAGGGCAAAGGATGAAGGGAGAGAGATGAAAGAAGGATATGGAGCCATGTTTCCACTCATCAACATGGTCTCTTTGA CTCACACTTATGGATAA
AA sequence Show only first row Show all	>Lus10009034 pacid=23173376 polypeptide=Lus10009034 locus=Lus10009034.g ID=Lus10009034.BGIv1.0 annot-version=v1.0 MAESSFPLLEMDYQIPQYFTELNQFHTFTQVPPSNFFTTHDRFDPVFDPTHHGGVVVEENIKKRKWLSMEDASSSMNNTNNNISSASDDQSGCCNNRSRG GRKRVRSNHGDGEEEKLKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQNQVDFLSMKLTAASTYYDFN AEEEATLQRAKDEGREMKEGYGAMFPLINMVSLTHTYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	0	1
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	2.0	0.8048
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	2.4	0.7976
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	2.8	0.7980
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	3.2	0.7909
AT1G27990			unknown protein		Lus10037043 [exp]	3.5	0.7923
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	4.2	0.7821
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10005517 [exp]	8.1	0.6733
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005281 [exp]	9.2	0.6571
AT2G18540			RmlC-like cupins superfamily p...		Lus10037937 [exp]	14.3	0.6682
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	14.4	0.6973

Compare expression of checked genes

Lus10009034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.