Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23280 372 / 6e-125 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 313 / 8e-103 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT4G35450 73 / 6e-14 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 72 / 2e-13 AKR2B ankyrin repeat-containing 2B (.1) AT2G38195 58 / 5e-09 RING/U-box superfamily protein (.1.2) AT1G59560 58 / 6e-09 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT1G63900 58 / 7e-09 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT2G38220 57 / 2e-08 RING/U-box superfamily protein (.1) AT2G38185 56 / 2e-08 RING/U-box superfamily protein (.1.2.3.4) AT5G12320 52 / 8e-08 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009674 [exp] 764 / 0 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033896 [exp] 247 / 8e-77 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033895 [exp] 127 / 6e-31 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003551 [exp] 108 / 6e-27 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009696 [exp] 64 / 8e-12 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10036033 [exp] 62 / 3e-11 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10013859 [exp] 63 / 1e-10 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 63 / 4e-10 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10020272 [exp] 59 / 4e-09 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070750 [exp] 541 / 0 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G167600 [exp] 533 / 0 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 513 / 8e-180 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G225300 [exp] 321 / 1e-104 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 112 / 4e-28 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.009G070700 [exp] 63 / 1e-11 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.010G185200 [exp] 63 / 2e-10 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.004G210000 [exp] 61 / 7e-10 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 61 / 9e-10 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.006G100400 [exp] 59 / 4e-09 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10009035 pacid=23173345 polypeptide=Lus10009035 locus=Lus10009035.g ID=Lus10009035.BGIv1.0 annot-version=v1.0 ATGGGGCAGTTCCAATCCAAGCCATCCAAGGATGAATTGGTATACCAGCAAGTCAGGTACGGGAACGCCGCTGGAATCAGAAGCCTTGTCAGGGAAGGGG CTGGCCTTGAGTGGATAGACAGCGAAGGGAAAACACCATTGATATTGGCGTGCATGAACCTTGAGCATTACAATGTTGCCAAAACCCTTATCGACTTTGG TGCTAATATTAATGCCTATCGTCCTGGTCGTATGGGCGGGACTCCATTGCATCATGCAGCTAAATTAGGACTCGAGCAGACTGTTAAACTACTTCTTTCA CACGGAGCTAATGCATTGGTGATGAATGATGAATGTCAAACGCCTCTTGAAGTTGCTAGAGCAAAAGGATACACCAATGTGGTTCGCGCCATTGAGGGTA TATTGAACCCTTCCTTCGTTTTCCAGGGTCACCTATGCCTATTCTCTGGTTTGCTCCGTGAGTTTTATGGCCCAGGATTTCTGGAAATTCTGACTCCTCA GTTTGTCACGAGGAAAGTATGGGTTGTTGTTTTACCAACTGGTTCACGCAACGCCAGGGAGCCGTTTAAGTTAGAGCTAGCAATATACCCTAGTTCACAG GTTGCCAAACCACGTACGGTGATTTCTTTGTGGAAGGCTAACCTAGAGGACCCTAAGTTGCAGCAGGCCGATCCTTCAATAACAATAGTCGACAATTCCA ACATGCCAAGGGGCCGCAGGCGGAGACGAATGAGGCATAGACCTCCAACCGTTAGGCAAACACGGATAAGACTTGCTGCTGCAAAGGAAGGCGATAGACA ACAGCTTCAGTGGTTTTGTGATGCATGCAAAGGAATACCTCAGGCAACACAGCCTCCACAATTTCTGCGAAGTTCGTACCCTCCAGCTCCTCAGCCTCAG GCAACAACACCCTTACCTGTTGATGATCTAGAATTAGCAATGGCAATGAGTGCCTCTTTCCAATCAGACATAAATGTGACTCCTACTCTGGATGTCAATG CTAGCTCTGAGGCAAGTGCCTCTACCAGTTCGAATGACTTTGTGAAGGCTAGCACCCATGGTCCTATGGCATCACCAGCTCAATCTGCGTCTGGAGCAAG TTCTAGTAAGAGCCAGGGGAATATCCACAATTCTAACTTGCCTGATGTATCCCCAGCACCTCAAGCATCTAGCTCAGTCCCATCAGCTCCGCCAATTGGT GATGAAATTGTGGAAGATGGACCGATTCAGTATCCAAGCATTGATTTTGACCCTGTTGATTTGCCTTCCGCACCCATGGAGGAATCACCCGTCAAATCGG GTGAAAAGAAGGAAGATGGTGCTTCCTCTGTTTGTGTGATATGTTTGGATGCTCCTGTGGAAGGAGCTTGCGTGCCATGCGGTCACATGGCCGGATGTAT GTCTTGTTTGACAGAGATCAAGACCAAGAATTGGGGTTGCCCTGTGTGCCGCACCAAGATTGATCAGATCGTAAGGCTGTATGCTGTTTGA
AA sequence Show only first row Show all	>Lus10009035 pacid=23173345 polypeptide=Lus10009035 locus=Lus10009035.g ID=Lus10009035.BGIv1.0 annot-version=v1.0 MGQFQSKPSKDELVYQQVRYGNAAGIRSLVREGAGLEWIDSEGKTPLILACMNLEHYNVAKTLIDFGANINAYRPGRMGGTPLHHAAKLGLEQTVKLLLS HGANALVMNDECQTPLEVARAKGYTNVVRAIEGILNPSFVFQGHLCLFSGLLREFYGPGFLEILTPQFVTRKVWVVVLPTGSRNAREPFKLELAIYPSSQ VAKPRTVISLWKANLEDPKLQQADPSITIVDNSNMPRGRRRRRMRHRPPTVRQTRIRLAAAKEGDRQQLQWFCDACKGIPQATQPPQFLRSSYPPAPQPQ ATTPLPVDDLELAMAMSASFQSDINVTPTLDVNASSEASASTSSNDFVKASTHGPMASPAQSASGASSSKSQGNIHNSNLPDVSPAPQASSSVPSAPPIG DEIVEDGPIQYPSIDFDPVDLPSAPMEESPVKSGEKKEDGASSVCVICLDAPVEGACVPCGHMAGCMSCLTEIKTKNWGCPVCRTKIDQIVRLYAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	0	1
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	1.4	0.8307
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10027805 [exp]	1.4	0.8199
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	2.8	0.7809
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	3.5	0.7973
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	6.0	0.8186
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	8.4	0.7898
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	8.4	0.7946
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	10.2	0.7092
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	11.3	0.7428
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	12.2	0.7757

Compare expression of checked genes

Lus10009035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.