Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35525 117 / 2e-34 PLAC8 family protein (.1) AT1G68630 116 / 7e-34 PLAC8 family protein (.1) AT3G18450 116 / 1e-33 PLAC8 family protein (.1) AT1G14870 114 / 4e-33 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT1G58320 110 / 8e-32 PLAC8 family protein (.1) AT1G49030 110 / 9e-31 PLAC8 family protein (.1) AT1G14880 107 / 2e-30 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT3G18460 106 / 1e-29 PLAC8 family protein (.1) AT3G18470 101 / 2e-28 PLAC8 family protein (.1) AT1G68610 89 / 4e-23 PCR11 PLANT CADMIUM RESISTANCE 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008890 [exp] 196 / 2e-65 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10004063 [exp] 186 / 1e-61 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10004064 [exp] 158 / 1e-45 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10034298 [exp] 112 / 6e-32 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10021696 [exp] 108 / 4e-30 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 102 / 8e-28 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 98 / 2e-26 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10041474 [exp] 74 / 2e-17 AT1G14870 112 / 3e-32 PLANT CADMIUM RESISTANCE 2 (.1) Lus10005257 [exp] 69 / 3e-15 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092200 [exp] 129 / 1e-38 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 119 / 1e-34 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 117 / 6e-34 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127800 [exp] 115 / 2e-33 AT1G68630 151 / 1e-47 PLAC8 family protein (.1) Potri.008G132775 [exp] 115 / 5e-33 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 114 / 8e-33 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 111 / 1e-31 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 111 / 2e-31 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 110 / 6e-31 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.008G132900 [exp] 107 / 6e-30 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10009036 pacid=23173369 polypeptide=Lus10009036 locus=Lus10009036.g ID=Lus10009036.BGIv1.0 annot-version=v1.0 ATGAATCCTCAACCCAACTACGTCACCGGCGGCGAGTGGACCTCCGGCATCTGCGACTGCTGTGAAGATACTGGCAGCTGCCTCAAGACTGTTTGTTGCC CTTGCATTACCTTCGGCCAGAGTGCTTCGACCGTCGGCCGGAATCATACGTCTTGCTTCGCATCCGGACTGTTGTTTTGCCTGCTGGCCAGCATGGGGGT AAGCTGCGTGTACTCGTACCGATACCGAAGCAAGCTTAGGGTGCAATACGGACTCCCAGAGAAGCCCTGTGGGGATTGCTTGATGCATTGGTGCTGCCAG CCTTTGGTTCTATGCCAGGAGTATCGCGAGCTTAAGAACCGTGGCCTTAACCCTTCCAAAGGATGGGAATCATCAACATCAGCACCATCATCCACGGCCG CGCCCGAGGTTACAAAGGGAATGCTTCGTACTTAA
AA sequence Show only first row Show all	>Lus10009036 pacid=23173369 polypeptide=Lus10009036 locus=Lus10009036.g ID=Lus10009036.BGIv1.0 annot-version=v1.0 MNPQPNYVTGGEWTSGICDCCEDTGSCLKTVCCPCITFGQSASTVGRNHTSCFASGLLFCLLASMGVSCVYSYRYRSKLRVQYGLPEKPCGDCLMHWCCQ PLVLCQEYRELKNRGLNPSKGWESSTSAPSSTAAPEVTKGMLRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	0	1
					Lus10002237 [exp]	1.4	0.9873
AT1G62935			unknown protein		Lus10009297 [exp]	1.7	0.9633
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	2.0	0.9620
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	2.0	0.9821
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	3.2	0.9372
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	3.9	0.8840
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10004307 [exp]	4.6	0.8691
AT1G64870			unknown protein		Lus10041678 [exp]	5.5	0.9312
AT1G16160		WAKL5	wall associated kinase-like 5 ...		Lus10013143 [exp]	6.3	0.9180
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	7.5	0.9257

Compare expression of checked genes

Lus10009036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.