Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18070 628 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT1G48635 375 / 3e-123 PEX3-2, PEX3 PEROXIN 3-2, peroxin 3 (.1.2) AT3G18160 352 / 2e-114 PEX3-1 peroxin 3-1 (.1.2.3) AT5G10630 253 / 4e-73 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G07920 226 / 1e-65 GTP binding Elongation factor Tu family protein (.1) AT1G07930 226 / 1e-65 GTP binding Elongation factor Tu family protein (.1.2) AT1G07940 226 / 1e-65 GTP binding Elongation factor Tu family protein (.1.2) AT5G60390 226 / 1e-65 GTP binding Elongation factor Tu family protein (.1.2.3) AT4G20360 80 / 2e-15 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 75 / 1e-13 GTP binding Elongation factor Tu family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009676 [exp] 687 / 0 AT1G48635 404 / 2e-140 PEROXIN 3-2, peroxin 3 (.1.2) Lus10041996 [exp] 679 / 0 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 675 / 0 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10041998 [exp] 533 / 0 AT1G48635 436 / 2e-153 PEROXIN 3-2, peroxin 3 (.1.2) Lus10018002 [exp] 238 / 6e-73 AT1G48635 201 / 2e-63 PEROXIN 3-2, peroxin 3 (.1.2) Lus10020153 [exp] 239 / 3e-68 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 239 / 1e-65 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040378 [exp] 221 / 1e-63 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 221 / 1e-63 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062500 [exp] 659 / 0 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.013G093400 [exp] 646 / 0 AT1G18070 797 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.015G041700 [exp] 417 / 3e-139 AT1G48635 439 / 1e-154 PEROXIN 3-2, peroxin 3 (.1.2) Potri.012G049700 [exp] 417 / 3e-139 AT1G48635 441 / 5e-155 PEROXIN 3-2, peroxin 3 (.1.2) Potri.006G275500 [exp] 237 / 1e-66 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.010G218600 [exp] 224 / 4e-65 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 224 / 7e-65 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 224 / 7e-65 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.018G006500 [exp] 229 / 1e-64 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.008G042500 [exp] 223 / 1e-64 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04882 [flax] [poplar] Peroxin-3 Peroxin-3 CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009038 pacid=23173374 polypeptide=Lus10009038 locus=Lus10009038.g ID=Lus10009038.BGIv1.0 annot-version=v1.0 ATGTTTTCTTTAAGGGACTTTTGGAGAAGGCATAAGAGGAAGGTTCTTGCTACAGCTGGTGTTGTAGGAAGTGGTTATTGCTTGTATAAAGTGTATAATG CGTACAAAAATCAGCTTGCCGATATGGAGAGACGGCTTGCTGATGAACGAGAGCATGATGAATTCGTTAAGGCCCAGATGCAATCTCATTTCGAGATCAT ACAGAGAATAGCTGATACGGTAACATTGCCACATTCCATTAGTTATTTGAATAACCGGATAACAGAAGAATTGGACCATTCGTATATCACAGAGGCTTTA CAAAGAGGGAAGGGTCAGCCTGCCAGTCTGACTACGGCAGAGAAACTTGAGCTATGGGACAAGCTCAAAATCATAAGTTTCACAAGAATGACGGTATCAC TGTGGGCAGTAACTCTACTTAGCCTGTATGTTAGAGTTCAAGTGAATATTCTTGGAAGACATTTATATATCGACATAGCACATGATCTGGGGATCTCTTT TATGCCGGAGGATGCTGATCTCATCGACCGAGATGACCAGCAGAAATTCTTGGCTAGTGCAGATTATCTCCCTCATTCTGGCTTGCTTCTGTTGGCAAAT GATGTACAAGTTGCCGCAGCAGAAGTTCTAAAGGGGAAACAACTGAAGGATTTGTTTGACGTGACAGCACTTCATGAAACCGTCATGCACATATCCGAAA CTTTCATAAGTACGGTAAATTCCGGCAGGTGGGTAGATTACTTAATGCCGGATGGTACCAAGCTACACAAAGACGCAATTGTCCCCACTGGCAGCGACAC GTTCCACACCGATCTTTCAAAATTCGACCAGCTAATGCTCGAGACACGAGAAGTAATACTGAGCCCCGAATTCGGCAGAGTGGTGGAGGCATCTCTGAAA CAACTGGTGACTGCATTGGTCGAAGACTTCGAATCCCTTGAGGGTAGTCTAACATCAACAGGGATACCCTTAGCGAAACTGTTGCCTCGAGTTGCCCAGA TGAGTTCGTCCTTGCTCAAGGAACCGAGCGAGAATCGTTACGTCCAAATCATGCAAGGCTCCCTAGAAGCGAGTAGTTATCGTAGCTCTGATGCGATCGT TGTGTGTCCACTGGTGTTTGCAACTCGGTTATTCATTGTGCATATGTTCTCACCATTGATTCTGGAAACACCGTTGAGAGTGCTTTCTCATGACTTTGAT GCTGGCAAGTCCACAATCTGTGGCCAAATACTCATTCTCAGCGGCCAGGTTGATGCTCGTACGAAGCAGAAGTACGAGAAAGAAGCGAGGGATAACGGTA GAGATAGCTGGTTTGTGGCTTACATTATGGACACCAATGAAGAAGAAAGGAAAAAGGGGAAAACTGTCGAAGTTGGAAGGGCGGATTTCGAAACAGAAAC GACACGATTCACCATTTTAGATGCGCCAGGCCACAAGAGTTACGTCCCAAACATGATCGGCGGAGCATCCCAAGCTGACATTGGGGTCTTGGTGATTTCT GCGCGGAAAGGCGAGTTTGAAACGGGATATGAGAGAGGTGGCCAAACCCGGGAACATGTTCAGCTTGCCAAGACCTTAGGTGTTACTAAGTTGCTTGTTG TTGTAAACAAAATGGATGATCCTACTGTGGATTGGTCTGAAGAAAGGTACGACGAAATTCGATCGAAGATGCTACCTTTTCTCAAGTCTTCTGGTTACAA TGTGAAGAAAGATAGAATGGTGTTTGATCCGGGTTTCTTTTGCATAGATGTCATATTCCTACCGTTATCCGGTTTTATCGGAGCAAACATAAACACCGGA ACGGACGAAAGCATATGCTCGTGGTGGAATGGCCCGTGTCTTTTTGAAGCGCTCGATCATATTGAAGTTCCTCTTGGAGACCCTAATGGACCTTTTAGGA TGCCAATCATCGATAAACAGAAAGATAAGGGAACTGTCGTGATGGGAAAAGTGGAGTCCGGTAGTGTGTCTGAGGGAGACCCGTTGATGGTGATGCCGAA TAAGACTCATGTAAGAGTGATCGATATATACATCGACGACACCAAGGTTAGGCATGCGGGGCCTGGGGAGAATCTATGCATAAGATTATCCGGAATAGAT GATGAAGCTATATTATCCGGTTTTGTATTGTCAAGTGTCGCAAGTCCGATTGCCGGAGTTACAGAATTCGTCGCTCAGTTGCAAACTCACGAGCTAAACA ATGCAATCTTCACAGCTGGTTACCAAGCTGTCATGCACATCCATTCCGTGGTCAAGGAATGCGAGGTAATCGAGCTGATTCAGCAAATCGATCCGAGGAC TAGGAAACCAATGAAGGCGAAACCCGTCTTTGTTAAGGATCATGCAATTATCGTGTGCCGGATTCAGGTGAGCAGTGTGATATGCTTGGAGCGTTTCTCG GACTTCCCACAACTCGGGAGGTTCACTCTTCGTTCCGAAGGGAGGACAGTTGCGGTTGGGAAGGTCACTGCACTTCCTTCAAGTTCCACTTAA
AA sequence Show only first row Show all	>Lus10009038 pacid=23173374 polypeptide=Lus10009038 locus=Lus10009038.g ID=Lus10009038.BGIv1.0 annot-version=v1.0 MFSLRDFWRRHKRKVLATAGVVGSGYCLYKVYNAYKNQLADMERRLADEREHDEFVKAQMQSHFEIIQRIADTVTLPHSISYLNNRITEELDHSYITEAL QRGKGQPASLTTAEKLELWDKLKIISFTRMTVSLWAVTLLSLYVRVQVNILGRHLYIDIAHDLGISFMPEDADLIDRDDQQKFLASADYLPHSGLLLLAN DVQVAAAEVLKGKQLKDLFDVTALHETVMHISETFISTVNSGRWVDYLMPDGTKLHKDAIVPTGSDTFHTDLSKFDQLMLETREVILSPEFGRVVEASLK QLVTALVEDFESLEGSLTSTGIPLAKLLPRVAQMSSSLLKEPSENRYVQIMQGSLEASSYRSSDAIVVCPLVFATRLFIVHMFSPLILETPLRVLSHDFD AGKSTICGQILILSGQVDARTKQKYEKEARDNGRDSWFVAYIMDTNEEERKKGKTVEVGRADFETETTRFTILDAPGHKSYVPNMIGGASQADIGVLVIS ARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVDWSEERYDEIRSKMLPFLKSSGYNVKKDRMVFDPGFFCIDVIFLPLSGFIGANINTG TDESICSWWNGPCLFEALDHIEVPLGDPNGPFRMPIIDKQKDKGTVVMGKVESGSVSEGDPLMVMPNKTHVRVIDIYIDDTKVRHAGPGENLCIRLSGID DEAILSGFVLSSVASPIAGVTEFVAQLQTHELNNAIFTAGYQAVMHIHSVVKECEVIELIQQIDPRTRKPMKAKPVFVKDHAIIVCRIQVSSVICLERFS DFPQLGRFTLRSEGRTVAVGKVTALPSSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	0	1
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	7.9	0.7304
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	8.0	0.7302
AT4G17250			unknown protein		Lus10004355 [exp]	9.4	0.6984
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	15.9	0.6961
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	17.7	0.6834
AT3G45040			phosphatidate cytidylyltransfe...		Lus10037383 [exp]	18.4	0.6564
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	20.0	0.7219
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	22.4	0.6723
AT3G22380		TIC	time for coffee (.1.2)		Lus10002447 [exp]	23.2	0.6631
AT3G50120			Plant protein of unknown funct...		Lus10018320 [exp]	23.2	0.5964

Compare expression of checked genes

Lus10009038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.