Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73980 955 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT1G26190 926 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT2G01460 211 / 7e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40870 84 / 7e-17 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT4G26510 82 / 3e-16 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 82 / 3e-16 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27440 81 / 5e-16 UKL5 uridine kinase-like 5 (.1) AT3G27190 79 / 4e-15 UKL2 uridine kinase-like 2 (.1) AT1G32060 64 / 2e-10 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009678 [exp] 1291 / 0 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 919 / 0 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 899 / 0 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10025598 [exp] 229 / 3e-64 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027063 [exp] 224 / 2e-62 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041569 [exp] 92 / 2e-19 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 89 / 3e-18 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 80 / 2e-15 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 80 / 3e-15 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055400 [exp] 1044 / 0 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 928 / 0 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 909 / 0 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G130200 [exp] 220 / 4e-61 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 218 / 3e-60 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G069600 [exp] 88 / 4e-18 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 87 / 8e-18 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 84 / 5e-17 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G467800 [exp] 81 / 9e-16 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 79 / 5e-15 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF01928 [flax] [poplar] CYTH CYTH domain CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10009040 pacid=23173372 polypeptide=Lus10009040 locus=Lus10009040.g ID=Lus10009040.BGIv1.0 annot-version=v1.0 ATGGCGCAGGACGGTGCTGCTAACGGCGTTAGTTCGCCGAGGAGGCGAGCTGGTGGGTTGCTGAGGGACCAAGTCCAGCTGGTGAAGAGGAAAGATTCGG AGAAGAGGTACGAGATAGCTGCCATAGACGAAACGCTGTCGTTTGAGAAGGGGTTCTTCATAGTGATCAGGGCGTGTCAGCTGCTGGCTCAGAAGAACGA TGGGTTGATCATTGTTGGTGTGGCGGGTCCTTCTGGAGCTGGGAAGACTGTGTTCACTGAGAAAGTTTTGAACTTCATGCCTAGTGTTGCTGTGATCACC ATGGATAATTACAACGATTCTAGCCGCATTATTGATGGCAACTTTGATGACCCGAGGCTGACAGATTATGACACATTGCTCGATAACATCCGCGGTTTAA GAGAAGGGAAGCCTGTTGAAGTCCCGATATACGACTTCAAGACGAGCTCCAGAATTGGCTACAGGACAGTGGAAGTTCCTAGCTCTCGCATTGTGTTGAT AGAGGGCATTTACGCGTTAAGCGAGAAGCTGAGACCGTTGCTAGATCTTCGTGTATCCATTACCGGAGGGGTTCACTTCGACCTCGTCAAACGTGTTCTA CGTGACATCCAACGTGCTGGCCAAGAGCCTGAAGAGATCATCCATCAGATCTCTGAAACGGTTTATCCAATGTACAAGGCGTTCATTGAGCCCGATCTCA AGACTGCTCATATCAAGATCATCAACAAGTTCAATCCTTTCACTGGATTCCAGAGTCCTACTTATATTCTCAAGTCAGCAAGGTCTGTAACAGATGAGCA AATAAAGGCTGTTCTGTCTGAAGAGCGCAGTGAGAAAACAGAAGAAACTTATGATATCTATCTTCTGCCTCCCGGCGAAGACCCAGAAGCATGCCAGTCG TATTTGAGGATGCGGAACAGGGATGGGAAATACAATCTCATGTTCGAGGAGTGGGTTACAGACAGTCCGTTCATAATCTCGCCCAGGATAACTTTTGAAG TTAGTGTCCGCCTTCTGGGAGGATTGATGGCTTTGGGGTACACAATTGCGGCCATACTGAAACGGAGTAGCCATGTGTTTCATGATGATAAGGTCTGCGT CAAGACTGACTGGTTAGAACAACTCAACCGCCGGTATGTTCAGGTGCAAGGTAGAGACCGGGCGTACGTTAAACATGTCGGGGAGCAGCTAGGCTTGGAC GGTTCATACGTTCCTCGAACATACATAGAACATATTCAGCTGGAAAAGCTTGTAAATGATGTCATGGCCCTGCCAGATGATTTGAAGACGAAACTAAGCA TCGATGATGACTTGGCTTCAAGCCCAAAAGAAGCCCTTTCTCGAGCTTCTGCAGACCGGCGAAACAAGCATCTTAGCCGTGGGATGTCGCAATCATTTTC AGATAGACGCGACAAGAATATGTCGAGACTGACGAGGCTCGCGGTGAACAATAGACCATTTGATGGGAGGAATATAGTGGAGTCACCTGCTAGTCTGTCT ACACAGGGCGTTATTGCTCAGCTTTCGGACCAGATCTCGACCCTGAACGAGCGGATGGATGAGTTCACATCCCGACTCGAAGACCTCAATTCCAAGTTGA GTGTCAGGAAAGTCTCAGCAGCTAGCCAGCAAAACTTGGCTTTACCTTCTGAACCTTGCAATGGCGTCACCGGACCACCTCCTGCGATCTTTGTCAGTGG GATTCCGAATGGTTCGCTGAGTGGATCGTTGATACCTCATTCTTCGTCTTCGTCGCAACTGGCCAAAGAGTCTCAACTCATGGATGAGCTTCTGCAGGTC GCTCGTGGACAGCGGCAGATCCTGCACCAGCTAGACAACCTTAGCAACCTGGTGCACGAGTGCTGGGGCGAACAGGCTCGTAAAGGACGAACAGAACGGT CGAGTAGTAGTAGTCTGATGATCGAACCAGACTCGATCGCCCTTCCCCTGATCTTGACCCTAGCAATCGGCGGTCTAGGCGTGCTCTTGTTCAGAGGCCT CAAGTGA
AA sequence Show only first row Show all	>Lus10009040 pacid=23173372 polypeptide=Lus10009040 locus=Lus10009040.g ID=Lus10009040.BGIv1.0 annot-version=v1.0 MAQDGAANGVSSPRRRAGGLLRDQVQLVKRKDSEKRYEIAAIDETLSFEKGFFIVIRACQLLAQKNDGLIIVGVAGPSGAGKTVFTEKVLNFMPSVAVIT MDNYNDSSRIIDGNFDDPRLTDYDTLLDNIRGLREGKPVEVPIYDFKTSSRIGYRTVEVPSSRIVLIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVL RDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQSPTYILKSARSVTDEQIKAVLSEERSEKTEETYDIYLLPPGEDPEACQS YLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVCVKTDWLEQLNRRYVQVQGRDRAYVKHVGEQLGLD GSYVPRTYIEHIQLEKLVNDVMALPDDLKTKLSIDDDLASSPKEALSRASADRRNKHLSRGMSQSFSDRRDKNMSRLTRLAVNNRPFDGRNIVESPASLS TQGVIAQLSDQISTLNERMDEFTSRLEDLNSKLSVRKVSAASQQNLALPSEPCNGVTGPPPAIFVSGIPNGSLSGSLIPHSSSSSQLAKESQLMDELLQV ARGQRQILHQLDNLSNLVHECWGEQARKGRTERSSSSSLMIEPDSIALPLILTLAIGGLGVLLFRGLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	0	1
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	8.3	0.8311
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10008260 [exp]	12.1	0.7016
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	14.4	0.8143
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	16.2	0.7976
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	16.7	0.8162
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	18.7	0.7892
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10032514 [exp]	21.9	0.8083
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	26.2	0.8033
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	26.7	0.7147
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	29.3	0.7779

Compare expression of checked genes

Lus10009040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.