Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73480 495 / 8e-174 alpha/beta-Hydrolases superfamily protein (.1) AT1G18360 450 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1) AT5G11650 376 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 143 / 6e-39 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 140 / 6e-38 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 139 / 2e-37 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39410 127 / 4e-33 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52760 126 / 1e-32 LysoPL2 lysophospholipase 2 (.1) AT2G39400 119 / 2e-30 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 119 / 4e-30 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009679 [exp] 726 / 0 AT1G73480 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000572 [exp] 330 / 4e-110 AT5G11650 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10006043 [exp] 330 / 5e-110 AT5G11650 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 131 / 2e-34 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 131 / 4e-34 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 129 / 4e-33 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 128 / 8e-33 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 125 / 8e-33 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10017600 [exp] 125 / 2e-32 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031900 [exp] 539 / 0 AT1G73480 504 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G041800 [exp] 538 / 0 AT1G73480 510 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G045800 [exp] 349 / 7e-118 AT5G11650 540 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G237200 [exp] 343 / 2e-115 AT5G11650 483 / 4e-171 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 157 / 2e-44 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 137 / 3e-36 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 131 / 6e-34 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 127 / 2e-33 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 122 / 2e-31 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 119 / 5e-30 AT1G52760 560 / 0.0 lysophospholipase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10009041 pacid=23173336 polypeptide=Lus10009041 locus=Lus10009041.g ID=Lus10009041.BGIv1.0 annot-version=v1.0 ATGTCGACGGTGGCGGCGGCAGCAACGACGCAATCACTAATGCTGACATCGGGAGCTAGCGGGAGGATCAACGCGCTGCTGTCCGTGAGGGCGTTGAAGA GTCTTTTGGCGTTGATTCACGCGGTGGTCATTTTGTTCCTCTTGCCGTTTCGCGGCGTGAGGCGGCGGAGTACGGCGGTGGGCGGAGGAGGCTCCGCCGT TGTTGGTGGTGGTGGGAGCGAGAAGGGAGGGGTGAGGGCGGCGAATGTTGTGGTGCCGTGGAAGAAGAGCGGTGGGAATGGGAAAGGCGGGAGAGCCATG GCGGCGATGGTGGATCAGGAGGTGGCGGCGAGAAGGACGATTGCTATGAGGAGGGTGTTGCAGGATGATGATCCTGAGACGGTTAGGGATTTCTCCATGT TCGTTACTGCTAGAGGGGATACAGTGTTTACTCAGTCTTGGTTCCCTGTTTCTGGGGAGATCAGGGGAGTGGTGGTTCTCATGCATGGCCTGAATGAACA CAGTGGCCGGTACGACGAGTTTGCGAAGCAACTGAACCGGAACGGATACAAAGTCTACGGAATGGACTGGATTGGGACTGCACATGTCCAACTGCTGGAA AAAAGAAAGCTCCTTTATAAATATTATGTTTGTTTGATCTGTGCTAAAACTGGGGCCATTTTCGCCGTTTTCGTTTCAGGACACGGTGGAAGCGATGGAC TACATGCATATGTGCCTTCTCTAGATTACGCTGTATCTGATCTGAAATCCTATCTAGACAAGGTAATGGCCGAAAACCCCGGGCTTCCATGTTTCTGCTT TGGACACTCCACTGGTGCAGCCATTGTTCTCAAGGCGGCTCTTGATCCGAAAGTCGAAGCCTCCCTTGCTGGAATGGTGCTCACTTCGCCTGCAGTTGGA GTCCAGCCATCCCACCCCATTATAGTATTACTGGCCCCAGTCTTCTCGGCGCTGCTACCGAGGTACCAGTTCAGCGCAGCGAACAAGAAAGGGATGCCGG TATCTCGAGACGCGGACGCCCTGATCGCAAAGTACACAGACCCTCTAGTCTACACCGGTTCGATACGAGTGAGGACAGGGTACGAGATCCTGCGCAACAC GACCTACCTGCAGCAGAATCTGAACAGGTTTAAAGTCCCCTTCTTGGTCCTCCACGGCTCAGCAGACACAGTGACCGATCCTGAAAGTTCTCAAAAATTC TATGAAGAGGCGTCATCTACTGACAAGACGATCAAGCTGCTCGAAGGGTACTTGCACGACCTGCTGTTCGAACCTGAACGGCAGGATATAATGGACTGCA TCATTGAATGGCTTAACAGCAGAGTATGA
AA sequence Show only first row Show all	>Lus10009041 pacid=23173336 polypeptide=Lus10009041 locus=Lus10009041.g ID=Lus10009041.BGIv1.0 annot-version=v1.0 MSTVAAAATTQSLMLTSGASGRINALLSVRALKSLLALIHAVVILFLLPFRGVRRRSTAVGGGGSAVVGGGGSEKGGVRAANVVVPWKKSGGNGKGGRAM AAMVDQEVAARRTIAMRRVLQDDDPETVRDFSMFVTARGDTVFTQSWFPVSGEIRGVVVLMHGLNEHSGRYDEFAKQLNRNGYKVYGMDWIGTAHVQLLE KRKLLYKYYVCLICAKTGAIFAVFVSGHGGSDGLHAYVPSLDYAVSDLKSYLDKVMAENPGLPCFCFGHSTGAAIVLKAALDPKVEASLAGMVLTSPAVG VQPSHPIIVLLAPVFSALLPRYQFSAANKKGMPVSRDADALIAKYTDPLVYTGSIRVRTGYEILRNTTYLQQNLNRFKVPFLVLHGSADTVTDPESSQKF YEEASSTDKTIKLLEGYLHDLLFEPERQDIMDCIIEWLNSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	0	1
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	3.9	0.8312
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	6.0	0.8118
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	7.7	0.8007
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	10.7	0.8169
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	10.8	0.8059
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	11.7	0.7430
AT5G58530			Glutaredoxin family protein (....		Lus10040949 [exp]	17.9	0.7645
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	21.3	0.7751
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	21.4	0.7784
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	22.5	0.7590

Compare expression of checked genes

Lus10009041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.