Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18260 1011 / 0 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) AT1G73570 806 / 0 HCP-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009680 [exp] 1297 / 0 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009047 [exp] 178 / 3e-51 AT1G18260 162 / 8e-47 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10026694 [exp] 54 / 6e-07 AT1G70590 412 / 1e-144 F-box family protein (.1) Lus10004621 [exp] 44 / 0.0003 AT1G70590 337 / 1e-116 F-box family protein (.1) Lus10009046 [exp] 0 / 1 AT1G18260 50 / 5e-12 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038100 [exp] 1084 / 0 AT1G18260 994 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.012G046300 [exp] 1075 / 0 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.008G187200 [exp] 49 / 2e-05 AT1G70590 405 / 5e-142 F-box family protein (.1) Potri.010G045300 [exp] 45 / 0.0002 AT1G70590 434 / 2e-153 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10009042 pacid=23173382 polypeptide=Lus10009042 locus=Lus10009042.g ID=Lus10009042.BGIv1.0 annot-version=v1.0 ATGAAGATGAAGAAGAAGCTCCGGTTGGTGAGCAAGATTCCCGTACTCTGTGTTCTCCTCCTAATCGCAGCTCTAGCTCAACCCATCTCAACCGTAGCTC GTCCATTCGTCCTCGTGCTCTCACAGGACGACCTGAAGGAAGTGCCGGCTTCTCCATCCGATGCCGACGATCCATCATCCTCCGCCGATACACCGCCGGA GTGGGATGAGTTCGGTGACTCCGATTCCAAGCCGGAGCACCAGCTGGACCCTGGCTCGTGGCGCCCAATCTTCGAGCCGGACTCCACCCCGGGAGCCGAT CCGGTCGACGGCGAGATGGCAGGGTACTACGAGGTCGTCGGGAAGATGCTGTCGGCTGTGTCCGAGGGTGAGATCAGGATGATGGAGGAAGCGGCGGCGG ATATTGAGGTTGCCGCGAAGGAGAAAGGGAATCCCCATGCTCAGTCGCTGCTGGGGTTCCTAGTGGGTATGGGACAGATGCAGGAGATGAATAAGGCCAA GGCGTTTCTGTATCATCATTTTGCCTTCAATGGAGGGAATATGCAGTCGAAGATGGCGCTTGCTTACACTTACTCACGTCAGGATATGTACGATAAGGCA GTGAAGATATACGCCGAGCTAGCGGAAGTGGCAGTGAACAGTTTCCTGATCTCCAAAGATTCGCCTGTGATTGAGCCTGTTAGGATTCACAACGGAGCGG AGGAGAACAAGGAAGCTCTGAGGAGGTTTAAAGGAGAGGAGGATGAGGATTTCCAGATTCTGGAGTATCAGGCTCAGAAGGGGAATGCTGCAGCTATGTA CAAGATTGGTCTGTTTTACTACTTTGGGTTGAGAGGATTGAGGCGTGACTATGTCAAGGCATTGACTTGGTTCTCTAAGGCCGTGGAGAAAGGGGAGCCT AGATCAATGGAGCTTCTTGGTGAGATTTACGCCCGGGGAGCTGGTGTTGAGAGGAACTATACTAAAGCACTGAAATGGCTTACGCTTGCTTCCAGACAGC AGCTTTACTCTGCGTATAATGGCATGGGGTATCTCTATGTTAAAGGGTATGGAGTGGACAAGAAGAACTACACCAAAGCGAAAGAGTACTTTGAGAAGGC TGAGGACAATGATGAACCAGGTGGCCATTATAACCTAGGAGTTATGTACCTCAAAGGAATTGGCGTAAAGAGAGACATAAGGCTGGCTTGTCAGTACTTC ATAGTTGCTGCTAATGCTGGTCAACCCAAGGCGTTTTATCAGCTGGCCAAGATGTTTCATACTGGTGTTGGACTCAAGAAGAACCTGGCCATGGCTACTG CGTTATATAAACTGGTAGCAGAAAGAGGACCATGGAGTTCCTTGTCCAGATGGGCACTAGAATCCTACCTTAAAGGCGACATAGGCAAGGCGTTCCTATT ATATTCCAGAATGGCCGAGATGGGGTATGAGATAGCCCAAAGTAACGCCGCATGGATCCTCGACAAATACGGAGAAAGAAGCATGTGCGTAGGTGAATCC GGGTTCTGTACCGATGCAGAAAGGCATCAGCGAGCACACTCGTTGTGGTGGCAAGCTTCAGAGCAGGGCAACGAACACGCTGCGTTACTCATCGGTGATG CATATTACTACGGTCGGGGTACCGAAAGGGACTATGAACGAGCGGCGGAAGCATACATGCATGCAAAGTCTCAATCCAACGCACAAGCCATGTTCAACCT CGGTTACATGCACGAGCATGGGCAAGGTCTTCCGCTCGATCTCCATCTTGCTAAGCGTTACTACGATCAAGCATTAGAAGTCGATCCGGCTGCTAAGTTA CCCGTGACGCTCGCTCTGGCTAGCTTGTGGGTTCGAAAGAACCATGCCGATAGTTTCATGGTCGACATGATCGATTCGTTGCCCGAAGTGTTCCCGAAAG TCGAAGCCTGGGTCGAAAACGTGATCATGGAAGAAGGAAACGCCACGATATTGACTCTCTTCGTCTGTCTTCTCACCGTCCTCTACCTTCGTGAACGACA ACGCAGAAACGTTGCCGCTGCAGCTGGCGCCGGTGACGGCGCTGTACCGCCGCACCAACCGGTCGAGCCGGATAGGATTCACAACGGAGCGGAGGAGAAC AAGGAAGCTCTGAGGAGGTTTAAAGGAGAGGAGGATGAGGATTTCCAGATTCTGGAGTATCAGGCTCAGAAGGGGAATGCTGCAGCTATGTACAAGATTG GTCTGTTTTACTACTTTGGGTTGAGAGGATTGAGGCGTGACTATGTCAAGGCATTGACTTGGTTCTCTAAGGCCGTGGAGAAAGGGGAGCCTAGATCAAT GGAGCTTCTTGGTGAGATTTACGCCCGGGGAGCTGGTGTTGAGAGGAACTATACTAAAGCACTGAAATGGCTTACTCTTGCTTCCAGACAGCAGCTTTAC TCTGCGTATAATGGCATGGGGTATCTCTATGTTAAAGGGTATGGAGTGGACAAGAAGAACTACACCAAAGCGAAAGAGTACTTTGAGAAGGCTGAGGACA ATGATGAACCAGGTGGCCATTATAACCTAGGAGTTATGTACCTCAAAGGAATTGGCGTAAAGAGAGACATAAGGCTGGCTTGTCAGTACTTCATAGTTGC TGCTAATGCTGGTCAACCCAAGGCGTTTTATCAGCTGGCCAAGATGTTTCATACTGGTGTTGGACTCAAGAAGAACCTGGCCATGGCTACTGCGTTATAT AAACTGGTAGCAGAAAGAGGACCATGGAGTTCCTTGTCCAGATGGGCACTAGAATCCTACCTTAAAGGCGACATAGGCAAGGCGTTCCTATTATATTCCA GAATGGCCGAGATGGGGTATGAGATAGCCCAAAGTAACGCCGCATGGATCCTCGACAAATACGGAGAAAGAAGCATGTGCGTAGGTGAATCCGGGTTCTG TACCGATGCAGAAAGGCATCAGCGAGCACACTCGTTGTGGTGGCAAGCTTCAGAGCAGGGCAACGAACACGCTGCGTTACTCATCGGTGATGCATATTAC TACGGTCGGGGTACCGAAAGGGACTATGAACGAGCGGCGGAAGCATACATGCATGCAAAGTCTCAATCCAACGCACAAGCCATGTTCAACCTCGGTTACA TGCACGAGCATGGGCAAGGTCTTCCGCTCGATCTCCATCTTGCTAAGCGTTACTACGATCAAGCATTAGAAGTCGATCCGGCTGCTAAGTTACCCGTGAC GCTCGCTCTGGCTAGCTTGTGGGTTCGAAAGAACCATGCCGATAGTTTCATGGTCGACATGATCGATTCGTTGCCCGAAGTGTTCCCGAAAGTCGAAGCC TGGGTCGAAAACGTGATCATGGAAGAAGGAAACGCCACGATATTGACTCTCTTCGTCTGTCTTCTCACCGTCCTCTACCTTCGTGAACGACAACGCAGAA ACGTTGCCGCTGCAGCTGGCGCCGGTGACGGCGCTGTACCGCCGCACCAACCGGTCGAGCAGGATATACCTCCAGTCAACTGA
AA sequence Show only first row Show all	>Lus10009042 pacid=23173382 polypeptide=Lus10009042 locus=Lus10009042.g ID=Lus10009042.BGIv1.0 annot-version=v1.0 MKMKKKLRLVSKIPVLCVLLLIAALAQPISTVARPFVLVLSQDDLKEVPASPSDADDPSSSADTPPEWDEFGDSDSKPEHQLDPGSWRPIFEPDSTPGAD PVDGEMAGYYEVVGKMLSAVSEGEIRMMEEAAADIEVAAKEKGNPHAQSLLGFLVGMGQMQEMNKAKAFLYHHFAFNGGNMQSKMALAYTYSRQDMYDKA VKIYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRRFKGEEDEDFQILEYQAQKGNAAAMYKIGLFYYFGLRGLRRDYVKALTWFSKAVEKGEP RSMELLGEIYARGAGVERNYTKALKWLTLASRQQLYSAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAEDNDEPGGHYNLGVMYLKGIGVKRDIRLACQYF IVAANAGQPKAFYQLAKMFHTGVGLKKNLAMATALYKLVAERGPWSSLSRWALESYLKGDIGKAFLLYSRMAEMGYEIAQSNAAWILDKYGERSMCVGES GFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTERDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL PVTLALASLWVRKNHADSFMVDMIDSLPEVFPKVEAWVENVIMEEGNATILTLFVCLLTVLYLRERQRRNVAAAAGAGDGAVPPHQPVEPDRIHNGAEEN KEALRRFKGEEDEDFQILEYQAQKGNAAAMYKIGLFYYFGLRGLRRDYVKALTWFSKAVEKGEPRSMELLGEIYARGAGVERNYTKALKWLTLASRQQLY SAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAEDNDEPGGHYNLGVMYLKGIGVKRDIRLACQYFIVAANAGQPKAFYQLAKMFHTGVGLKKNLAMATALY KLVAERGPWSSLSRWALESYLKGDIGKAFLLYSRMAEMGYEIAQSNAAWILDKYGERSMCVGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYY YGRGTERDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALASLWVRKNHADSFMVDMIDSLPEVFPKVEA WVENVIMEEGNATILTLFVCLLTVLYLRERQRRNVAAAAGAGDGAVPPHQPVEQDIPPVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009042 [exp]	0	1
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	4.6	0.8702
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	5.2	0.8284
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	9.2	0.8352
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	10.4	0.8505
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	10.7	0.8651
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Lus10020966 [exp]	15.0	0.8676
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	16.0	0.8406
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	16.3	0.8563
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	18.0	0.8393
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	19.2	0.8394

Compare expression of checked genes

Lus10009042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.