Plant FIBer expression Database

Lus10009043 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009045
[exp]
83 / 2e-18 ND 39 / 2e-08
Lus10009046
[exp]
82 / 4e-18 AT1G18260 50 / 5e-12 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10009043 pacid=23173362 polypeptide=Lus10009043 locus=Lus10009043.g ID=Lus10009043.BGIv1.0 annot-version=v1.0
ATGGCGTCAAGAGTCGATCTTTTGCCCCAGAGCGGTAATGCTTTGGAAGGAAACGCTTGTGTGGAGTCTGATGATGGTAGAAGGAAACTGCTGGGTGATT
TCATAGACAATCATAAAGAGAATAATATTTCTGATGACAAGTTGAATTTGGACAAGTTGGTGTCTGAGAAGACTGTTGTAGGAGAAAGGCCGATGATGAT
CGAAAAAACAAAAAATCAAATAAAAAAAGAAAAGAAGAAGGCAAGCAAAACGAGGAAGAAGCTTGCCTTATCGAAGCAGCAGCAGCAGCCGGAGGAAGAA
AGGCCAAGTTCGAGTTGCTCTTCTCTCAGGAAAAGAACCAAAAATCAAAAGAGGAAACAACAGAGAAAAGCAAAGAAAAGAGCACAGGCTCTCGTTGATA
AAGAGAAAAAGGAGGATGCGTTAACCGAGTCTTCCAAGCCTATACCATATGGCTCCAGTCACGGTCGTGGCTGTCAATGTAGTATGCTTCTTGAAAAAGA
CTATTATTCACTTCCACATAATAAGCGGCGTCGCCTCCGTATGATTTGGGACAGAGTACTTGAGGACGACCTTCATGTCAGGGCTGATCAGATTCGAGTG
ACGCCAAATTTTAGGAAGATGGCTGAACTTTTCACAAGCTCTGGTGAGGATTCTGGTTCTGATTCTGATTCTGATTCTGGTTCTGATGAAGATTCTGATG
AAGATTATTATTAG
AA sequence
>Lus10009043 pacid=23173362 polypeptide=Lus10009043 locus=Lus10009043.g ID=Lus10009043.BGIv1.0 annot-version=v1.0
MASRVDLLPQSGNALEGNACVESDDGRRKLLGDFIDNHKENNISDDKLNLDKLVSEKTVVGERPMMIEKTKNQIKKEKKKASKTRKKLALSKQQQQPEEE
RPSSSCSSLRKRTKNQKRKQQRKAKKRAQALVDKEKKEDALTESSKPIPYGSSHGRGCQCSMLLEKDYYSLPHNKRRRLRMIWDRVLEDDLHVRADQIRV
TPNFRKMAELFTSSGEDSGSDSDSDSGSDEDSDEDYY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10009043
[exp]
0 1
AT3G21640 FKBP42, UCU2, T... ULTRACURVATA 2, TWISTED DWARF ... Lus10029505
[exp]
3.3 0.8121
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Lus10002943
[exp]
8.0 0.8003
AT1G15230 unknown protein Lus10035871
[exp]
8.9 0.7740
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Lus10009495
[exp]
10.6 0.7832
AT3G23490 CYN cyanase (.1) Lus10018091
[exp]
11.2 0.7800
AT1G04130 TPR2, AtTPR2 tetratricopeptide repeat 2, Te... Lus10025945
[exp]
11.5 0.7616
AT5G51740 Peptidase family M48 family pr... Lus10038897
[exp]
11.8 0.7822
AT1G11360 Adenine nucleotide alpha hydro... Lus10018515
[exp]
13.7 0.7774
AT1G16810 unknown protein Lus10026960
[exp]
14.7 0.7854
AT2G27020 PAG1 20S proteasome alpha subunit G... Lus10041296
[exp]
22.5 0.7237

Lus10009043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.