Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22970 176 / 2e-44 RSW4, AESP RADIALLY SWOLLEN 4, homolog of separase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006990 [exp] 240 / 7e-65 AT4G22970 1435 / 0.0 RADIALLY SWOLLEN 4, homolog of separase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021700 [exp] 183 / 8e-47 AT4G22970 1738 / 0.0 RADIALLY SWOLLEN 4, homolog of separase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF03568 [flax] [poplar] Peptidase_C50 Peptidase family C50
Representative CDS sequence Show only first row Show all	>Lus10009044 pacid=23173340 polypeptide=Lus10009044 locus=Lus10009044.g ID=Lus10009044.BGIv1.0 annot-version=v1.0 ATGGCATATTGTTTGAGGGTTCTTCGCAATCAAGAAGAACATCCAAACACAGAGATGGTCATCCAAGATGTAGAGAGTGCAATTGATCGGTGGTTGACGC TTATTTGCAATCATGATGAAGGATGCCCAATTATGGGCGATGCGATGTTTATGCTATGCAACATTGTTGATTTATCAACAATCAAGGGGTCTACAAAATT GAATAGTAAAATATATCGCTTGTTGATTACTTTTGCTGAATGGAGAAATCTGCCAAATCAAAGGTGGCTGAGCTTTTTAGTTGGAAGTCGACGACTTAGT CATGCTCTTTGCATCTCACCAGTCGATAAAGCCTTCCTCATTGAAATATGCAACTCAGATAAAGGATCGGAGTCGGGCAACATTAATTTTTGGCTGGATC ATCTGCAAGATAATATGACTACTCCATATGATATAGCTATAGCAGCTGTCTTCAAGCTCAAGTTATCTTATTCTCATGATGGTGATATTAAAATCAACGA TGCAATTGAGGTTGTGAATGAAGCTATTGACTCTGATGGTACTTCGGCGTTTACAAAAGCCAACCTTTGCTATGATTTGAGTGAAATACTTCTTTCGGCC GGGCGTTTACTTGAGGCTATTTTTTATGCAGAAAAAGGGTTTCAGTTGCGCTTGAAACTCTTCCTAAACATCTATACTAAAAAAGGCCCCTTAAAGAAGA GATATGAATCAGTCGCGATCAAACTTTGGTCGACTAGCCTAGCTCCAGAGGATATGCACTTGATGACTTCGTATAAAGTGCTCCAATGTTATCTTGAGAG CACTCTTCAAGTCAGCAAATTGTATCGTGAAACACTGAGTTTGGGGGAGTCAGAAGAGCAACTTAGAATTGCAAAAGAGATTTTGTCAGGCGATAAAGAT TCAGTAAGTTGTTCAAATTGCAGACTAATGTTGGAAGTCTCAGTCAATGGAGATCCTGATGTTGATAGATTGAAGAAGCTAGATACTGAAATGAATATCG GAAAAGGAGGTAGCGGGTCTCAGCAGAAGTATTCGCCTGAAGCCAAACTAAAGCATACAGAATATGGAGGTGAAAAGCGTAAAAGACAAGGTTCCCCCGA CAAACACGATCAGAAAAGACCAACACACCATCCATGTGTTTGCACGACGCTTCCTTGCTCCTACTGTTTCTTTGTGGAAAGCACAAAATCAGGTCAACTA TCTTCCTACCTCAAAATGAGGTGGGAGTTTGGGTTTCGGAAGTTACGGATAGGGCTATTCCATGAACAGGACGCCGAGAGTTTTCATACCGTATTTTGCG GAGACCGTAAGTCGAATGGAAAATGGGATGTATCAGCAATCAGACAACTAATACGCACAGATTTTTATCGGAACACATTTGCTATTCAGATTGTGGAAGT TCTATATGAAGAATGCTTAAAAGCATTAAGTGAAAATAGTAGCAGGGACAGGTCGTGTCAATTCGAGTTAGCAGATGCAGTGGAGTTGTTGTTTGAGGCG TATGTACTTTGCAGAGAGGTTCCTACACTTTTGAAGAAGGTCTCTTCGTTATTGAGCATAGTATATACTATTTTCAATTCGAAAGAGCACATGATCTCTG TGCCTTTGTGCGGTGAAGATCTTTCGCAAAGCCATTGGGCTTTATATTTTCATCAGGCTTCACTAGGCTCGAACCTTAACCACCAATTCTTTAGAAACAA GACTGCCAGAGAGCGTCGCACCGAAAAAAAGACCAGCAGAGAGCGTCCCACTGAAAAAAAGACCAGCAGAGAGCAGTATCTATCTTCTGCAACAATTCCT GAAGACGATTATCTGATGAGGGTTGCATCAAAATCGGTGACACAACTAGAAGCGTTCGTGACTGGCTTTTTCAGCGCTCTTGATCGAGATGCAACAATAT TCGGTCTAAGCACGATCACAGGCCGATTAGGCGTTATCTTGCAGAAATGGATTCTCTGTGATAAAAATGTGCAAGGTTGGTGGATTGCATCACACCTTCA TTGTAAGAACGCGGTAGTGATTCTCTTTCCCTTGTATTCTCCTTTGGAAGGTGCTTCAGACGATGCAATCCTTCCAAAGTTTACAAAATTGGTGGAGAAA CTAAAGAAGTTGTATGTTTCGGGTGTAATAAGAAGGGAACAACCGTACATAGACCAAATGGTGTCTATTGATCGGGAATTTCAATACTTTCTCAGCAACT TGCAGAAAGAGTTGTTTGGTGACTCAAACACTCAGCATGTTGTGGAATTGCTTCAACAGTTGCAAAACAATACAAAACCAACAATTTTGGTGTTGGACTA CCAGCTGAGCATGCTTCCATGGGAGAACATACCAATTCTCGAAAGCAAAGAAGTTTATAGGCTTCCGACAGTTGGGAGCATCTCTTGGATTTCCCAAAAC ACAACATTTTCCTCAATCGATCCATTTAGAGCATTTATAGTTGTGAACCCAGATGGAGATCTGTTGTATGATGAGAGTTTGTTTAAGTCGTTGATTCATG ACTTCAAAATCCCGGGAATAGTTAGATCTGCTCCGACAATAGAGCAATTTGCAAAAGCGGTGGAAAAGCATGATGTCTTTATCTATTGTGGCCATGGAAA TAGTCGACAATACTTTCCACGGAAGAGGATCAAAAGGCTTCAAAGATGTGGTGCCATGATGTTGATTGGCTGCAGCAACGGTGTGCTGAAATTAGACGGA GAGTACATCCCTTGTTGTGCTCCGTTCGACTACTTGCAAATTGGTTCACCTGCTGTATTCTCTACTATGTGGTCAGTAACTGAGGAACTTACCCTGCCCT TCATGAAGATTTATGAAGGTTGGAGGAAAGAACGAGATAACAAGGTTACCGTTGGGTCTTTCTTGGTTGAGTATCGCAACAATTGCAAGTACAGGTATGC TATGGGTGCTGTCGTAGTATGTTACGGCATTCCAACACGGTTGGTGGCAAAAGAGGTAGAACAAGGAAGCTCTGAGGAGGTTTAA
AA sequence Show only first row Show all	>Lus10009044 pacid=23173340 polypeptide=Lus10009044 locus=Lus10009044.g ID=Lus10009044.BGIv1.0 annot-version=v1.0 MAYCLRVLRNQEEHPNTEMVIQDVESAIDRWLTLICNHDEGCPIMGDAMFMLCNIVDLSTIKGSTKLNSKIYRLLITFAEWRNLPNQRWLSFLVGSRRLS HALCISPVDKAFLIEICNSDKGSESGNINFWLDHLQDNMTTPYDIAIAAVFKLKLSYSHDGDIKINDAIEVVNEAIDSDGTSAFTKANLCYDLSEILLSA GRLLEAIFYAEKGFQLRLKLFLNIYTKKGPLKKRYESVAIKLWSTSLAPEDMHLMTSYKVLQCYLESTLQVSKLYRETLSLGESEEQLRIAKEILSGDKD SVSCSNCRLMLEVSVNGDPDVDRLKKLDTEMNIGKGGSGSQQKYSPEAKLKHTEYGGEKRKRQGSPDKHDQKRPTHHPCVCTTLPCSYCFFVESTKSGQL SSYLKMRWEFGFRKLRIGLFHEQDAESFHTVFCGDRKSNGKWDVSAIRQLIRTDFYRNTFAIQIVEVLYEECLKALSENSSRDRSCQFELADAVELLFEA YVLCREVPTLLKKVSSLLSIVYTIFNSKEHMISVPLCGEDLSQSHWALYFHQASLGSNLNHQFFRNKTARERRTEKKTSRERPTEKKTSREQYLSSATIP EDDYLMRVASKSVTQLEAFVTGFFSALDRDATIFGLSTITGRLGVILQKWILCDKNVQGWWIASHLHCKNAVVILFPLYSPLEGASDDAILPKFTKLVEK LKKLYVSGVIRREQPYIDQMVSIDREFQYFLSNLQKELFGDSNTQHVVELLQQLQNNTKPTILVLDYQLSMLPWENIPILESKEVYRLPTVGSISWISQN TTFSSIDPFRAFIVVNPDGDLLYDESLFKSLIHDFKIPGIVRSAPTIEQFAKAVEKHDVFIYCGHGNSRQYFPRKRIKRLQRCGAMMLIGCSNGVLKLDG EYIPCCAPFDYLQIGSPAVFSTMWSVTEELTLPFMKIYEGWRKERDNKVTVGSFLVEYRNNCKYRYAMGAVVVCYGIPTRLVAKEVEQGSSEEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10009044 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10035766 [exp]	8.1	0.7519
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	10.0	0.7610
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	13.5	0.8339
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	15.0	0.8312
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	20.0	0.7955
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10024201 [exp]	20.6	0.8200
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	24.9	0.8237
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	26.3	0.8115
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10036199 [exp]	32.8	0.6887
					Lus10003556 [exp]	33.4	0.8154

Compare expression of checked genes

Lus10009044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.