Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009046 [exp] 324 / 4e-110 AT1G18260 50 / 5e-12 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009043 [exp] 84 / 1e-18 ND / Lus10031862 [exp] 0 / 1 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 0 / 1 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009045 pacid=23173378 polypeptide=Lus10009045 locus=Lus10009045.g ID=Lus10009045.BGIv1.0 annot-version=v1.0 ATGGCGTCAAGGATAGATGTGCGTTGTTCGACTGATGATGCCTCCAAATTATCCAAGAAGGAGGGAGGAGGGTTAGGTAGAAGGAAACTGCTGGGTGTTT TGATAGATAATCATCATAACGAGAATCATATTTCTGACAAAAAGTTGAATTTGGACAAGTTGGTGTCTGAGAAGATTGTGGTTGGAGAAAGGTCGATGAT GATTGAAAAAACAAAAAGTCAAATGAAAAGAGAAAAGAAGAGGGCAAGCAAGGCGAGGAAGAAGCTTGCCTTATTGAAGCAGCAGCAGCAGCCGGAGGAA GAAAGGCCAAGTTCGAGTTGTTCTTCTCTCAGGAAAAGAATCAAAAATCAAAAGAGGAAACAACAGAGAAAAGCAAAGAAAAGAGCACAGGCTCTCGTTG ATAAAGAGAAAAAGGAGGATCGGTTAACTGAGTCTTCCAAGCCTATACCATCTGCCGGCAGTCACGCAGCAGCAGCTGACCTTAATTTGTTGATTTGTTT CCGTGCAACAGATCTTAATAGCCCCCAGAAACTCAGTGCCGAGTTGGTTGAATTTTTAAAAAGCTCAGGTCCTGGTTTCAGAGCCCCTTCGTCTTCACGT ACATATACTATTGAGGAAAAGGAGGCTCTTTTAACTAACTGGAATTTTATACCATATGCCAGCGATCAGAGTGGATGTGGGGAAGCTTTGAAAAAAGCTG AATCCGGGCCTTTACGTCCAGTCGGTATCCGGACTCGGTTAACCCGGTATTTGAAGTCTAAACTATTTGCTAGCGGTTACCTTAGATATGGGGAAGGTAT GAAAATAGCTGAATTCGTCTTTGGTCTTGCAACTTGTGGAGAGAAGCAAGGGCTCTGTTCTTGCCCACGTCTTTCTCTGAGAAAAATCAAAATTGCTGGA CAAATCCCACAGCTCCACAATCCCTTCATCATGTAA
AA sequence Show only first row Show all	>Lus10009045 pacid=23173378 polypeptide=Lus10009045 locus=Lus10009045.g ID=Lus10009045.BGIv1.0 annot-version=v1.0 MASRIDVRCSTDDASKLSKKEGGGLGRRKLLGVLIDNHHNENHISDKKLNLDKLVSEKIVVGERSMMIEKTKSQMKREKKRASKARKKLALLKQQQQPEE ERPSSSCSSLRKRIKNQKRKQQRKAKKRAQALVDKEKKEDRLTESSKPIPSAGSHAAAADLNLLICFRATDLNSPQKLSAELVEFLKSSGPGFRAPSSSR TYTIEEKEALLTNWNFIPYASDQSGCGEALKKAESGPLRPVGIRTRLTRYLKSKLFASGYLRYGEGMKIAEFVFGLATCGEKQGLCSCPRLSLRKIKIAG QIPQLHNPFIM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009045 [exp]	0	1
AT1G26580			unknown protein		Lus10026655 [exp]	2.8	0.8371
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	7.1	0.8343
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	8.1	0.8285
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	8.9	0.8137
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	13.6	0.8243
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	15.2	0.7774
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10015144 [exp]	17.9	0.7920
AT5G58740			HSP20-like chaperones superfam...		Lus10040670 [exp]	18.3	0.8046
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10032844 [exp]	19.1	0.7410
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	19.6	0.7915

Compare expression of checked genes

Lus10009045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.