Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009045 [exp] 347 / 5e-119 ND 39 / 2e-08 Lus10009043 [exp] 87 / 1e-19 ND / Lus10009047 [exp] 52 / 6e-08 AT1G18260 162 / 8e-47 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009042 [exp] 0 / 1 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009680 [exp] 0 / 1 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038100 [exp] 0 / 1 AT1G18260 994 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.012G046300 [exp] 0 / 1 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009046 pacid=23173316 polypeptide=Lus10009046 locus=Lus10009046.g ID=Lus10009046.BGIv1.0 annot-version=v1.0 ATGGCGTCAAGGATAGATGTGCGTTGTTCGACTGATGATGCCTCCAAATTATCCAAGGAGGAGGGAGGAGGGTTAGGTAGAAGCAAACTGCTGGGTGTTT TGATAGATAATCATCATAAAGAGAATCATATTTCTGACAAGAAGTTGAATTTGGACAAGTTGGTGTCTGAGAAGATTGTGGTTGGAGAAAGGTCGATGAT GATTGAAAAAACAAAAAGTCAAATGAAAAAAGAAAAGAAGAGGGCAAGCAAGGCGAGGAAGAAGCTTGCCTTATTGAAGCAGCAGCAGCAGCCGGAGGAA GAAAGGCCAAGTTCGAGTTGTTCTTCTCTCAGGAAAAGAATCAAAAATCAAAAGAGGAAACAACAGAGAAAAGCAAAGAAAAGAGCACAGGCTCTCGTTG ATAAAGAGAAAAAGGAGGATCGGTTAACTGAGTCTTCCAAGCCTATACCATCTGCCGGCAGTCACGCAGCAGCAGCAGACCTTAATTTGTTGATTTGTTT CCGTGCAACAGATCTTAATAGCCCCCGGAAACTCAGTACCGAGTTGGTTGAATTTTTAAAAAGCTCTGGTCCTGGTTTCAGAGCCCCTTCGTCTTCACGT ACATTTACTATTGAGGAAAAGGAGGCTATTTTAACCAACTTGAATTTTATACCACTTCCCAGCGATCAGAGTGGATGGGGGGAAGCTTTGAAAAAAGCTG AATCCGGTAAATTAATATTGATTTTGAGGATTGTTTTGGTTCTTAATTCTCTGTTTATGCTTCCAGGTCTTGACATTGTTGGATTTGTTTCGCTGCAAAT AGGTCCTTTACGTCCAGTCGGTATCCGGACTCGGATAACCCGGTATTTGAAGTCTAAACTATTTGCTAGCGGTTACCTTAGATATGGGGAAGGTCGGCAT GATCGATTCGTTGCCAGAAGTGTTCCCGAGAGTCGAGGCATGGGTGGAAAAGGTGATAATGGAAGAAGGAAATGCCACGATCTAGACCTCTTCGTCTGTC TTCTAACGGTTCTCTATCTCCGTGAACGACAACGGAGAAACGTTGTTGCTGCCGGTGATGGCTTCGTACCGCCGCACCAACCGGTCGAGCAGGATGTACC TCCGGTCAACTGA
AA sequence Show only first row Show all	>Lus10009046 pacid=23173316 polypeptide=Lus10009046 locus=Lus10009046.g ID=Lus10009046.BGIv1.0 annot-version=v1.0 MASRIDVRCSTDDASKLSKEEGGGLGRSKLLGVLIDNHHKENHISDKKLNLDKLVSEKIVVGERSMMIEKTKSQMKKEKKRASKARKKLALLKQQQQPEE ERPSSSCSSLRKRIKNQKRKQQRKAKKRAQALVDKEKKEDRLTESSKPIPSAGSHAAAADLNLLICFRATDLNSPRKLSTELVEFLKSSGPGFRAPSSSR TFTIEEKEAILTNLNFIPLPSDQSGWGEALKKAESGKLILILRIVLVLNSLFMLPGLDIVGFVSLQIGPLRPVGIRTRITRYLKSKLFASGYLRYGEGRH DRFVARSVPESRGMGGKGDNGRRKCHDLDLFVCLLTVLYLRERQRRNVVAAGDGFVPPHQPVEQDVPPVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	0	1
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10029887 [exp]	2.4	0.8192
AT4G02720			unknown protein		Lus10042601 [exp]	4.5	0.8432
AT4G02720			unknown protein		Lus10022052 [exp]	4.6	0.8434
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	4.6	0.8162
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	5.5	0.7827
AT5G60050			BTB/POZ domain-containing prot...		Lus10023336 [exp]	5.7	0.8068
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	6.3	0.8309
AT3G51650			unknown protein		Lus10009100 [exp]	6.3	0.8090
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	7.3	0.8400
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	8.0	0.8132

Compare expression of checked genes

Lus10009046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.