Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18260 160 / 2e-46 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) AT1G73570 158 / 1e-45 HCP-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009680 [exp] 178 / 1e-52 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009042 [exp] 178 / 4e-52 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009046 [exp] 51 / 9e-08 AT1G18260 50 / 5e-12 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046300 [exp] 167 / 1e-48 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.015G038100 [exp] 161 / 9e-47 AT1G18260 994 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009047 pacid=23173317 polypeptide=Lus10009047 locus=Lus10009047.g ID=Lus10009047.BGIv1.0 annot-version=v1.0 ATGCTAGCCGATCCTGTGTTGCAAGCTACTGCGTTATATAAACCGGTAGCAGAAAGAGGACCATGGAGTTCCTTATCCAGATGGGCACTAGAATCCTACC TTAAAGGCGACATAGGCAAGGCGTTTCTATTGTGTTCGAGGATGGCCGAGATGGGGTATGAGATAGGCCAAAGTAACGCTGCATGGATCCACGACAAATA CGGAAAGAGGACCATGTGCGTAGGTGAATCCAGGTTTTGCACCGATGCAGAAAGGCATCAGCGAGCACACTCGTTGTGGTGGCAAGCTTCAAAGCAGGGC GCTAAAGTCGATCCTGCTGGGAAATTACCAGTGAGGCTCGCTCTGGCAAATTTGTGGGTTCGAAAGAACCATACCGGTAGTTTCATGGTCGGCATGATCG ATTCGTTGCCAGAAGTGTTCCCGAGAGTCGAGGCATGGGTGGAAAAGGTGATAATGGAGTATTTAAGAGTGGATTTGTCTAGAGGTTTTAGTTTCAGGTT TGTTGATACAGAATGCTTTTAA
AA sequence Show only first row Show all	>Lus10009047 pacid=23173317 polypeptide=Lus10009047 locus=Lus10009047.g ID=Lus10009047.BGIv1.0 annot-version=v1.0 MLADPVLQATALYKPVAERGPWSSLSRWALESYLKGDIGKAFLLCSRMAEMGYEIGQSNAAWIHDKYGKRTMCVGESRFCTDAERHQRAHSLWWQASKQG AKVDPAGKLPVRLALANLWVRKNHTGSFMVGMIDSLPEVFPRVEAWVEKVIMEYLRVDLSRGFSFRFVDTECF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	0	1
AT1G30140			unknown protein		Lus10024751 [exp]	2.4	0.9497
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10009638 [exp]	2.8	0.9215
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	3.0	0.9282
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	4.5	0.9309
					Lus10001222 [exp]	5.4	0.9085
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	6.7	0.9190
AT1G76480			unknown protein		Lus10006035 [exp]	6.9	0.9200
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	7.5	0.9087
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	9.1	0.9002
					Lus10022119 [exp]	10.2	0.8775

Compare expression of checked genes

Lus10009047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.