Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48570 363 / 3e-122 zinc finger (Ran-binding) family protein (.1) AT1G70650 227 / 4e-69 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 201 / 6e-57 zinc finger (Ran-binding) family protein (.1) AT5G17790 138 / 6e-35 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G53460 58 / 3e-09 unknown protein AT2G26695 54 / 1e-08 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 50 / 3e-07 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 49 / 9e-07 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT2G17975 45 / 5e-05 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009681 [exp] 751 / 0 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 232 / 1e-70 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10003580 [exp] 186 / 1e-54 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015180 [exp] 172 / 1e-46 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 140 / 2e-35 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 132 / 6e-33 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 125 / 7e-31 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 61 / 2e-10 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 59 / 5e-10 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038200 [exp] 411 / 7e-141 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 386 / 4e-129 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 233 / 8e-71 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.005G033000 [exp] 199 / 3e-56 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 198 / 2e-55 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 147 / 7e-38 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 68 / 2e-12 AT1G53460 254 / 3e-83 unknown protein Potri.018G066900 [exp] 59 / 4e-10 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 56 / 3e-09 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G149900 [exp] 54 / 1e-08 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10009049 pacid=23173326 polypeptide=Lus10009049 locus=Lus10009049.g ID=Lus10009049.BGIv1.0 annot-version=v1.0 ATGGCGACTTTAAGATTCTCCATCTTCAGAGCTTCGCTCTTCTACAAACCCACCATTCCCCGCCCAAATTTCATCCTCCCAGTCGCTCCTCTCCCCTCCG CGAAGCCTATCCACTTCCAGCAACACTCATGTTCCACGGCCACCGCCACCGCCGTAGCCGCCGCCGAGAGCTTGAGTCCGCATCCATGGCCCGAGTGGGT CGCCTTCGTCAACAGATTGAAAACCAAAGGCTACCTATTGGAACCCAAGACGCCAGCAACTGACCAGACCAGCGAGGCCGCCACCGTAAGTGGCAAAGGC GATGACTTTGTCGTCTACAGAGATATGAATCGGCTGAAAGACGCTTGCCTCAGCTTCGGCCGTGATCGATACGACATTTTGAAGTTGTTGTCTGAGCCAG AGATTCAAACAGTGGTGGATACTGGCTGCCCGAACCTTTTGAGGAAGGCTGTGAATTCTGGCAAAAGGTTGAGAGCATATCTGCGATTGGATGAAGGCGA TGTCTGTGGTGTGTGCAATTTTCGGGGCTCCTGTGACAGAGCTTATGTTATCCTAAAGGACAACGAAGCCGAAGCAAGAACGGTGGATTTAGTCCGAATC CTGATGTTCTATGCGTTGGATCCGATTGTTATATCGGATGGACAGAGACCTGCTGGTAGAGAGACTGTGGAAGAAGCTGCTAGAAAGCTGCTCTCTGAGA TGGTTGTGTTGAGTGAAAAGACAGCTGATCCTGCACCAATGAAGTCAGTTGCTACAAAAAATGTTCAAGCGGTTCGCAAGCCTGACAATATAGCGACAGC CATCTACCTGAACTTAGGTGACAGAGAACGATCGGTGTCTGAGAATGTCGAGATGAAGAGAGGAGACTGGATGTGTTCCAAGTGCAACTTCTTGAACTTT GCGAGGAACAAACGATGCTTGAAATGCTGCGAAGAAGGTCCGAAGAGTGCTCCTCCTGTTGATTTCGAAATGAAGAAAGGAGATTGGCTGTGTTCTGAGT GTAACTTCATAAACTTTGCCAGAAACTCCAGCTGCCTCAAGTGCAGCAGTTCGAGGCCAAAACGGGTTGGAGTTGCTGATGTCGAAATGAAGAAAGGAGA TTGGAACTGCCCACAGTGTTCGTTCATGAACTTTGCAAGTAACAAGGCGTGCCTGTCGTGCAAAGGGCAACGGCCCAAGCTTGTGATGGGGGAGTGGGAA TGCTCGTCGTGTGGGTACTTCAACTACAGCAGAAACACAGCGTGTCTAAAGTGCAAGACTGGTAAACCTGATTCGGGTACGAAGAAGAGCAATTTTGTCG ACGAATCTGCAGCAGATTACGAGTGGAAACGCCCCGAGTAG
AA sequence Show only first row Show all	>Lus10009049 pacid=23173326 polypeptide=Lus10009049 locus=Lus10009049.g ID=Lus10009049.BGIv1.0 annot-version=v1.0 MATLRFSIFRASLFYKPTIPRPNFILPVAPLPSAKPIHFQQHSCSTATATAVAAAESLSPHPWPEWVAFVNRLKTKGYLLEPKTPATDQTSEAATVSGKG DDFVVYRDMNRLKDACLSFGRDRYDILKLLSEPEIQTVVDTGCPNLLRKAVNSGKRLRAYLRLDEGDVCGVCNFRGSCDRAYVILKDNEAEARTVDLVRI LMFYALDPIVISDGQRPAGRETVEEAARKLLSEMVVLSEKTADPAPMKSVATKNVQAVRKPDNIATAIYLNLGDRERSVSENVEMKRGDWMCSKCNFLNF ARNKRCLKCCEEGPKSAPPVDFEMKKGDWLCSECNFINFARNSSCLKCSSSRPKRVGVADVEMKKGDWNCPQCSFMNFASNKACLSCKGQRPKLVMGEWE CSSCGYFNYSRNTACLKCKTGKPDSGTKKSNFVDESAADYEWKRPE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	0	1
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	2.0	0.9070
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	3.5	0.8867
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	3.7	0.9078
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	3.9	0.8925
AT5G48470			unknown protein		Lus10038234 [exp]	4.2	0.8361
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	5.5	0.8829
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	6.0	0.8800
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	6.9	0.8653
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10009759 [exp]	8.2	0.7974
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	8.4	0.8207

Compare expression of checked genes

Lus10009049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.