Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17970 646 / 0 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 522 / 2e-179 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G08980 344 / 2e-112 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT1G56440 80 / 2e-15 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 67 / 2e-11 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 65 / 5e-11 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25660 62 / 6e-10 Amidase family protein (.1) AT1G62740 62 / 7e-10 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G08320 61 / 1e-09 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G56090 58 / 5e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009682 [exp] 1011 / 0 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 828 / 0 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 811 / 0 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10029941 [exp] 358 / 1e-117 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10004466 [exp] 345 / 1e-112 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10031418 [exp] 77 / 1e-14 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016685 [exp] 72 / 1e-12 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10004336 [exp] 67 / 4e-11 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10018179 [exp] 66 / 4e-11 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038600 [exp] 724 / 0 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 720 / 0 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 511 / 2e-175 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.013G024200 [exp] 373 / 1e-123 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 355 / 1e-116 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.005G014100 [exp] 78 / 5e-15 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G008400 [exp] 78 / 6e-15 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G070300 [exp] 72 / 8e-13 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 69 / 4e-12 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.005G177400 [exp] 64 / 2e-10 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10009050 pacid=23173381 polypeptide=Lus10009050 locus=Lus10009050.g ID=Lus10009050.BGIv1.0 annot-version=v1.0 ATGGCTCCATCTTCCTCCTCCGTGCCGGCCAATCTATTTGTCCTCCTCGGGCTAGGTCTCGCCGGGATTCTGATGCTGACTAAGAAGTTGAAGAAAGCTG TCCGAGAAGACTTCGGCGCCTTCGTCCAGAAGCTTCAACTCCTTCCGCCGCCTCAGCCGGCTCCGCCCAAGGCTCGCCACCCTCTCACCGGACTCACGTT CGCTGCCTCCGACGTGTTTGACATTGAAGGATTCGTGACTGGTTTTGGGCATCCCGATTGGGCAAGGACACACGGGGAAGCTTCTAAGACGGCTGTCATC GTTTCGAGTCTTGTTGAAGGAGGTGCTACTTGTGTAGGGAGAACTGTTGTTGACGAACTTGCTTATAGTATCAATGGAGAAAATAAACATTATGGTACAC CTACAAATCCCGCAGCTCCTGCTTGTGTGCCCGGTGGATCTTCAAGTGGAGCAGCTGTTGCTGTAGCTGCTAAGCTTGTAGACTTTTCTTTAGGCATTGA TACAGTTGGTGGTGTAAGAGTGCCTGCTGCATTTTGTGGGGTAATAGGGTTCCGGCCGTCACATGGAGTTCTTTCAACCATTGGAATGCTAACGGTTTCA CCAAGTCTCGATACAGTTGGATTGTTTGCCAACGATCCAGATATTCTACGACGTGTCGGTCATGTTCTCTTTCAACTTCCATTTGCTGTGCAACGTAAAC CTCGGCAAATAATAATAGCTGATGACTTTTTTGAACTACTCGAGATGCCGGGCAACAAGCTTGCTCAGGCATTAATCAATTCCACCGAGAAGCTCTTTGG AAGACAAGTGGTGAAGCATGCAAACCTTGATGAGTTTCTCTCTTCTAATGTTCCAAGCTTGAAAAAGATTCATACAGAAAAGACAAATGGCAAAGTGAAA ACCTCTTCTGTGAAAATGCTGGCAAATATAATGGACATTCTTAATAAATACGAGTTCAATGATAGTCACAAAGAGTGGTTGAAAACGGAAAATCCCATCC TTGATCCTTTTATCTCTGCACAATTGACTGATGCGGTGGAGATTTCTGATACAAAGATTGAAACATACAGATCTGTGAGAAATGAAATGCGCGCCGCCAT TGACGCTCTGTTAAAGAACGACGGCATTCTGGCAATCCCCACAACAGCTGATTTCCCTCCTAAACTCAATGCTAAAGAGATGCTTTCAGAGGACTACAAG TTACGCTCGTATAGCCTGTTGAGTCTTGCTAGCCTCTCTGGTTGTTGTCAGGTGACAATCCCAGTATGGAAGCATGACAAGAGCCCTACTTCAGTTTCGT TAATAGCCCGACATGGGGGTGATCGCTTTTTACTAGACACTTTGCAGAGCATATATGCATCTGTACAAGAGCAAGCTGAAGCTCTTCTTACCTCCAAACA ATCCAGTAATTCTGACAACCGGGGAGCATCTGCTGATGCGGCAAAGGAGAAGGGAAACCAAGCATTCAAGGATAAGCAATGGAAGAAGGCTATCGGATTT TACACAGAAGCCATCAAACTCAATGACAGAAACGCAACTTATTACAGCAACAGAGCTGCGGCTTATCTCGAAATTGCAGGATTTCTTCAGGCTGAGACTG ATTGTTCAGCAGCTATTGACCTTGACAAAAAGGTGAGCGATCTCTCGAAAGAAATTGTTGCGGAATGTAGTTTGCATACTGTTATCTGTTTTGAGATTCC CCCGAAATTCAACAATGGATTCTCTAACAGCGTGTTGCCCACATTTTTGCAGAACGTGAAGGCTTATCTGAGAAGAGGCACAGCAAGAGAAATGCTTGGT TATTACAAGGAGGCGATGGAAGATTTCGAGCACGCATTGGTGCTCGAGCCGACTAACAAAAGGGCAGCAGCTTCTGCAGAGAGACTGAGAAAGGTGTTCC AAATAGGCGGTTGA
AA sequence Show only first row Show all	>Lus10009050 pacid=23173381 polypeptide=Lus10009050 locus=Lus10009050.g ID=Lus10009050.BGIv1.0 annot-version=v1.0 MAPSSSSVPANLFVLLGLGLAGILMLTKKLKKAVREDFGAFVQKLQLLPPPQPAPPKARHPLTGLTFAASDVFDIEGFVTGFGHPDWARTHGEASKTAVI VSSLVEGGATCVGRTVVDELAYSINGENKHYGTPTNPAAPACVPGGSSSGAAVAVAAKLVDFSLGIDTVGGVRVPAAFCGVIGFRPSHGVLSTIGMLTVS PSLDTVGLFANDPDILRRVGHVLFQLPFAVQRKPRQIIIADDFFELLEMPGNKLAQALINSTEKLFGRQVVKHANLDEFLSSNVPSLKKIHTEKTNGKVK TSSVKMLANIMDILNKYEFNDSHKEWLKTENPILDPFISAQLTDAVEISDTKIETYRSVRNEMRAAIDALLKNDGILAIPTTADFPPKLNAKEMLSEDYK LRSYSLLSLASLSGCCQVTIPVWKHDKSPTSVSLIARHGGDRFLLDTLQSIYASVQEQAEALLTSKQSSNSDNRGASADAAKEKGNQAFKDKQWKKAIGF YTEAIKLNDRNATYYSNRAAAYLEIAGFLQAETDCSAAIDLDKKVSDLSKEIVAECSLHTVICFEIPPKFNNGFSNSVLPTFLQNVKAYLRRGTAREMLG YYKEAMEDFEHALVLEPTNKRAAASAERLRKVFQIGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	0	1
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	1.0	0.9338
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	1.4	0.9223
AT5G01590			unknown protein		Lus10022672 [exp]	1.7	0.9134
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	4.5	0.9118
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	5.5	0.9041
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	6.6	0.8896
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	7.5	0.9006
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10000205 [exp]	7.7	0.8545
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	9.8	0.8759
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	12.0	0.8964

Compare expression of checked genes

Lus10009050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.