Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48580 195 / 2e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009683 [exp] 599 / 0 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047000 [exp] 223 / 5e-68 AT1G48580 261 / 3e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009051 pacid=23173383 polypeptide=Lus10009051 locus=Lus10009051.g ID=Lus10009051.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGAAGAAGCTTGGGAAGAAGCGTTCGATCTCGACGATTCCGATCTGTCTCTTCTCCGCCCTCTCAAACGCCACCACCAGCCAGTAAAAC CCTCCGCCGACTCTGCCGCCGGCGTCGGCGGAAGTATCTCTAGATCCGAACCATTTCTCAGGCGCTGTTCTTCTCCTTCTTCAACTTCCCTTTCTCAATC TTCCCAAACTTCGGGGCACCGCCGATTCGAGCTGAACTCCTCACCGCGTCTTTGCGAAAGTATCTCTAGAACCGAACCGTTTCTCAGAGTTTGTTCTTCT TCTTCAACTCCGCTCGCCCGATCTTCACAGCATCACCGACTCGAAGGGAGCTCCTCGCCGCAGCTCCGTGTGATTCCTGGTCCCGCTGGAATCTTGCAAG CAGCCATGTATCGGAGGAAGGAGCAGCGCAACGACGTATTGGTATGCCAGGGACAGGAGCCGATACCAACTCAGGAGTATGTGAGGAGAGCTATGGAAGA CTGTGGAGCCGATGGTGACGATTTCCAGGGCGAACCTTGGCTCAGCGCTGTTAATTTCATCCGCCGTAAAAGGTTAGTGGATGATGATGGTGAGATCGGG ATGCCTTTGAGCTTGGTCAAGGGCTTGAGGACTGCTCACAAGGCACCTCAGGTTGTTGCTGTTGTTAAATCCTGTACCTCAAATGGCCTCGGTGATCTGA TGGTGAATCTCAAGGATCCTACTGGATGTGTTGATGCTAGCATACATCGGAGAGTGCTCAAAGAAGTCGAGTCGGGGAAGGACATATCCGTTGGAGCTGT GCTCATAGTGAAAGAGGTTGCAGTTTTCTCCCCTTCACGCTCTTCGCATTACCTCAACATAACACCAAGCAATGTGGTGAAGATCTTCTCCAAGGACTAC ACATCAGTGAGAGCACCATTGGAAGAGGATAACCTTGCATTAACCGACATCCGGACTTCTCTAATATCCGACACCAGACTTCAAACATCAAATCGACAGA CACAGACTCGAACCAATCCATCACAAACCTTAGGAATCCTTAACAATCTCAAACGAAACGCCAACTCTCTCGAGAGGAGCCAACACCAGACAAAAGGATC GAAAGAAGTAGCTATGGACGAGGATTGTATCGTGTACGAGCTTGAGGATGGCAGAAGCCAATGCAACAATGTCACTCAAGCAGATGGCGTGATTAGCACA CAAGCGAATCTCGAGAACCCTAGCCAGGCGGTGAAGCAATCTGAAGGTAGAGCATTGCTTCCAGAGTGGACAGATGAGCAACTCAACGAGCTTTTCGCAA TGGATTAG
AA sequence Show only first row Show all	>Lus10009051 pacid=23173383 polypeptide=Lus10009051 locus=Lus10009051.g ID=Lus10009051.BGIv1.0 annot-version=v1.0 MAEEEEAWEEAFDLDDSDLSLLRPLKRHHQPVKPSADSAAGVGGSISRSEPFLRRCSSPSSTSLSQSSQTSGHRRFELNSSPRLCESISRTEPFLRVCSS SSTPLARSSQHHRLEGSSSPQLRVIPGPAGILQAAMYRRKEQRNDVLVCQGQEPIPTQEYVRRAMEDCGADGDDFQGEPWLSAVNFIRRKRLVDDDGEIG MPLSLVKGLRTAHKAPQVVAVVKSCTSNGLGDLMVNLKDPTGCVDASIHRRVLKEVESGKDISVGAVLIVKEVAVFSPSRSSHYLNITPSNVVKIFSKDY TSVRAPLEEDNLALTDIRTSLISDTRLQTSNRQTQTRTNPSQTLGILNNLKRNANSLERSQHQTKGSKEVAMDEDCIVYELEDGRSQCNNVTQADGVIST QANLENPSQAVKQSEGRALLPEWTDEQLNELFAMD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48580			unknown protein		Lus10009051 [exp]	0	1
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10039683 [exp]	5.3	0.6683
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	6.0	0.7453
AT2G38025			Cysteine proteinases superfami...		Lus10021738 [exp]	7.3	0.8033
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10039728 [exp]	15.6	0.7629
AT1G56230			Protein of unknown function (D...		Lus10020675 [exp]	25.5	0.6327
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	33.0	0.7353
AT4G22740			glycine-rich protein (.1.2)		Lus10032201 [exp]	52.8	0.6590
AT2G03370			Glycosyltransferase family 61 ...		Lus10037123 [exp]	86.9	0.6415
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	142.2	0.6349

Compare expression of checked genes

Lus10009051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.