Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44900 1234 / 0 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G46280 354 / 2e-105 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G16440 351 / 7e-104 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G07690 338 / 3e-100 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT4G02060 332 / 3e-98 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 332 / 5e-97 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT3G09660 292 / 1e-83 MCM8 minichromosome maintenance 8 (.1) AT2G14050 287 / 4e-83 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009683 [exp] 1172 / 0 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10015267 [exp] 353 / 2e-101 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 341 / 3e-100 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 334 / 5e-98 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 330 / 1e-96 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10002427 [exp] 326 / 5e-96 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10001452 [exp] 323 / 6e-95 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10038384 [exp] 314 / 7e-91 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 311 / 8e-90 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070500 [exp] 1401 / 0 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 354 / 9e-106 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G188700 [exp] 343 / 3e-102 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.014G121000 [exp] 336 / 1e-99 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 335 / 4e-99 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.009G121500 [exp] 331 / 9e-97 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G074000 [exp] 325 / 1e-94 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G131900 [exp] 310 / 1e-89 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 286 / 2e-82 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 74 / 6e-16 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12619 [flax] [poplar] MCM2_N Mini-chromosome maintenance protein 2 CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10009052 pacid=23173329 polypeptide=Lus10009052 locus=Lus10009052.g ID=Lus10009052.BGIv1.0 annot-version=v1.0 ATGGCGTCGCCGCCTCCGAATTCGGGCAACCTACCGCCGTCGAGTCCGGATTCCCAGACCTCGGCGGATTTCAACACCGACGCACTCCCCTACTTCACCA GTCAGAATACTGATGACGATGAAGCCTCCGTGGATCCTCGAATCATCCCGGACGATGTTGAGGATATCCCAGCTGAGGAGGAGGAAGAAGAAGGAGAGGA TCTCTTCCACGACGCTTTCATGGATGATTACCGGGGAATGGATGAGCACGACCAGTACGAGTCAGTTGGGCTGGACGACTCGTTGCAGGATGAACGGGAT ATGGATCAGATCGTTCAGGATCGGAGAGCTGCTGAGCTTGAGCTTGATGCTCGCGAAGGCCGTGCTGCTAACCGGAAGCTTCCTCAACTTCTCCATGACC TTGACGATGACAACTACAGGCCTTCAAAGAGATCTCGAGCTGGTTTCAGGCCGCCTGCTGATCCAAACAGCGTTGATGATACTGATGGTGTACCCAGCTC GCCAGGAAGGTCACAGGGTGGTGATGTGCCAATGACTGATCCAACCGATGATTACAATTACGAGGATGAAGATGATGAAAGCGAGTTCGATATGTATAAG GTCCAGGGAACCTTGCGAGAGTGGGTTACTAGAGACGAGGTTCGACGTTTCATTGCCAGGAAGTTCAAGGAGTTCTTGTTAACCTATGTGAATCCGAAGA GCGCACAGGGAAATTATGAATATGTGCGGCTGATTAATGAGATGGTTTCAGCAAACAAGTGTAGCTTGGAGATTGATTACAAGCAATTCATCTATGTGCA TCCAAACATTGCCATTTGGCTTGCTGATGCACCTCAATCTGTCTTGGAAGTCATGGAAGAGGTTGCCAAAAGTGTTGTTTTCGACTTGCACCCGAATTAC AAGAAGATCCATCAGACAATCTATGTTCGAGTTACCAACTTGCCTGTGTATGATCAGATCCGAAACATCAGGCAGATACATTTGAACACCATGATTCGCA TTGGGGGAGTTGTGACTAGACGTTCAGGAGTGTTTCCTCAGTTGCAGCAGGTGAAATATGACTGCAACAAATGTGGGGCTGTCTTGGGACCCTTTTTCCA GAATTCATATTCAGAAGTCAAGGTTGGTTCCTGCCCTGAATGCCAGTCTAAAGGGCCATTTACCGTTAATGTTGAGCAGACGATTTACAGGAACTACCAG AAGCTTACCCTCCAAGAAAGCCCAGGCATCGTCCCAGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTTTTGAACGATTTGATCGATTGTGCTCGCC CTGGCGAAGAGATTGAAGTGACTGGTGTATATACAAACAACTTTGACTTATCATTGAACACCAAGAACGGATTCCCTGTCTTTGCTACTGTGATTGAAGC AAACTACGTTACGAAGAAGCACGACCTCTTCTCATCGTACAAACTCACCCAAGAAGACAAGGACGAGATCGAAAAGCTGGCAAAAGACCCACGAATTGGA GAAAGGATTGTCAAGTCCATTGCTCCATCTATCTACGGCCACGAGGATATCAAAACTGCAATTGCACTTGCAATGTTCGGAGGCCAAGAGAAAAACGTCC AAGGGAAACATCGACTTCGTGGTGACATCAATGTACTCCTGCTAGGTGATCCAGGCACAGCAAAGTCTCAGTTCCTCAAGTACGTGGAGAAGACGGGCCA AAGAGCCGTCTACACAACTGGTAAAGGAGCTTCTGCTGTAGGTCTCACAGCAGCAGTCCACAAGGATCCAGTGACAAGAGAGTGGACCCTTGAAGGTGGT GCCCTTGTTCTAGCTGACAAAGGTATCTGCCTCATTGACGAATTCGACAAGATGAACGATCAAGACAGGGTCAGCATCCACGAGGCGATGGAGCAACAGA ACGATGACAACTACAGGCCTTCAAAGAGATCTCGAGCTGGTTTCAGGCCGCCTGCTGATCCAAACAGCGTTGATGATACTGATGGTGTACCCAGCTCGCC AGGAAGGTCACAGGGTGGTGATGTGCCAATGACTGATCCAACCGATGATTACAATTACGAGGATGAAGATGATGAAAGCGAGTTCGATATGTATAAGGTC CAGGGAACCTTGCGAGAGTGGGTTACTAGAGACGAGGTTCGACGTTTCATTGCCAGGAAGTTCAAGGAGTTCTTGTTAACCTATGTGAATCCGAAGAGCG CACAGGGAAATTATGAATATGTGCGGCTGATTAATGAGATGGTTTCAGCAAACAAGTGTAGCTTGGAGATTGATTACAAGCAATTCATCTATGTGCATCC AAACATTGCCATTTGGCTTGCTGATGCACCTCAATCTGTCTTGGAAGTCATGGAAGAGGTTGCCAAAAGTGTTGTTTTTGACTTGCACCCGAATTACAAG AAGATCCATCAGACAATCTATGTTCGAGTTACCAACTTGCCTGTGTATGATCAGATCCGAAACATCAGGCAGATACATTTGAACACCATGATTCGCATTG GGGGAGTTGTGACTAGACGTTCAGGAGTGTTTCCTCAGTTGCAGCAGGTGAAATATGACTGCAACAAATGTGGGGCTGTCTTGGGACCCTTTTTCCAGAA TTCATATTCAGAAGTCAAGGTTGGTTCCTGCCCTGAATGCCAGTCTAAAGGGCCATTTACCGTTAATGTTGAGCAGACGATTTACAGGAACTACCAGAAG CTTACCCTCCAAGAAAGCCCAGGCATCGTCCCAGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTTTTGAACGATTTGATCGATTGTGCTCGCCCTG GCGAAGAGATTGAAGTGACTGGTGTATATACAAACAACTTTGACTTATCATTGAACACCAAGAACGGATTCCCTGTCTTTGCTACTGTGATTGAAGCAAA CTACGTTACGAAGAAGCACGACCTCTTCTCATCGTACAAACTCACCCAAGAAGACAAGGATGAGATTGAGAAGCTGGCAAAAGACCCACGAATCGGAGAA AGGATTGTCAAGTCCATTGCTCCATCTATCTACGGCCACGAGGATATCAAAACTGCAATTGCACTTGCAATGTTCGGAGGCCAAGAGAAAAACGTCCAAG GGAAACATCGACTTCGTGGTGACATCAATGTACTCCTGCTAGGTGATCCAGGCACAGCAAAGTCTCAGTTCCTCAAGTACGTGGAGAAGACGGGCCAAAG AGCCGTCTACACAACTGGTAAAGGAGCTTCTGCTGTAGGTCTCACAGCAGCAGTCCACAAGGATCCAGTGACAAGAGAGTGGACCCTTGAAGGTGGTGCC CTTGTTCTAGCTGACAAAGGTATCTGCCTCATTGACGAATTCGACAAGATGAATGATCAAGACAGAGTCAGCATCCACGAGGCAATGGAGCAACAGAGTA TAAGCATATCGAAAGCTGGCATCGTTACGTCTCTCCAAGCTCGTTGTTCTGTCATTGCTGCTGCAAATCCAGTTGGTGGAAGATATGATTCATCGAAGAC ATTCGGTCAGAATGTCGAGCTGACCGATCCCATTGTTTCTCGTTTCGACATCCTATGTGTAGTTAAGGACGTGGTGGATCCAGTATTAGATGAGATGCTT GCAAAATTCGTGGTCGACAGTCACTTCAAGTCGCAAGCAAAGGGTGCCACCATCCACGACAGGTCCATGAACGAGTCCCAAGAAGACAGCCAAGCCACTT CTGGCCCTGTTGATCCAGACATTATCCCTCAAGATATGCTGAAGAAGTACGTATCCTACGCCAAACTCAACATCTTCCCAAGGCTACATGACTCCGACAT GGAAAAGCTTACTCAAGTCTACGCTGAACTACGTAGGGAATCTGCACATGGTCAGGGAGTTCCGATAGCGGTAAGGCACATCGAATCGATGATTAGGATG TCGGAGGCACACGCCAGGATGCACCTGAGGCACCACGTGACAGCAGAAGATGTGGACATGGCGATTCGAGTCCTCCTCAGCTCGTTCATATCGACTCAGA AGTATGGAGTTCAGAGAGCCTTACAGAAGAGCTTCAGAAAGTACATCACGCTGAAGATGGATTACAACAGAACGCTGCTGAATCTCCTGCGAGAGCTCGT GAAACGAGCCCTCCGATTTGAAGAGATCATCTCAGGTGCCAATGCCTCGAGGCTTACACACATTGATGTGAAGATTCAGGATCTTCAAACCATGGCTGAG GAACGAGAGATAACTGACTTGAAGCCATTCTTCTCGAGCAGTGAGTTTTCAGCAGCTGATTTCGAGCTTATGGAAGATCGACTTGTTATAAGGCATCGCC TTCATTAG
AA sequence Show only first row Show all	>Lus10009052 pacid=23173329 polypeptide=Lus10009052 locus=Lus10009052.g ID=Lus10009052.BGIv1.0 annot-version=v1.0 MASPPPNSGNLPPSSPDSQTSADFNTDALPYFTSQNTDDDEASVDPRIIPDDVEDIPAEEEEEEGEDLFHDAFMDDYRGMDEHDQYESVGLDDSLQDERD MDQIVQDRRAAELELDAREGRAANRKLPQLLHDLDDDNYRPSKRSRAGFRPPADPNSVDDTDGVPSSPGRSQGGDVPMTDPTDDYNYEDEDDESEFDMYK VQGTLREWVTRDEVRRFIARKFKEFLLTYVNPKSAQGNYEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAKSVVFDLHPNY KKIHQTIYVRVTNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAVLGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQ KLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVIEANYVTKKHDLFSSYKLTQEDKDEIEKLAKDPRIG ERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVQGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGG ALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQNDDNYRPSKRSRAGFRPPADPNSVDDTDGVPSSPGRSQGGDVPMTDPTDDYNYEDEDDESEFDMYKV QGTLREWVTRDEVRRFIARKFKEFLLTYVNPKSAQGNYEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAKSVVFDLHPNYK KIHQTIYVRVTNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAVLGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQK LTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVIEANYVTKKHDLFSSYKLTQEDKDEIEKLAKDPRIGE RIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVQGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGA LVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFGQNVELTDPIVSRFDILCVVKDVVDPVLDEML AKFVVDSHFKSQAKGATIHDRSMNESQEDSQATSGPVDPDIIPQDMLKKYVSYAKLNIFPRLHDSDMEKLTQVYAELRRESAHGQGVPIAVRHIESMIRM SEAHARMHLRHHVTAEDVDMAIRVLLSSFISTQKYGVQRALQKSFRKYITLKMDYNRTLLNLLRELVKRALRFEEIISGANASRLTHIDVKIQDLQTMAE EREITDLKPFFSSSEFSAADFELMEDRLVIRHRLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	0	1
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	1.4	0.9829
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	2.0	0.9787
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	3.5	0.9764
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	5.3	0.9652
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	5.5	0.9631
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	6.9	0.9522
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10033526 [exp]	7.5	0.9420
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	9.4	0.9516
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	10.8	0.9487
AT4G15890			binding (.1)		Lus10001471 [exp]	12.2	0.9479

Compare expression of checked genes

Lus10009052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.