Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01420 707 / 0 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 696 / 0 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 695 / 0 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G73590 683 / 0 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT5G57090 680 / 0 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 310 / 6e-98 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 206 / 8e-61 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 187 / 1e-53 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001429 [exp] 678 / 0 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 673 / 0 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 666 / 0 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 555 / 0 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 379 / 1e-129 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 380 / 2e-127 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 335 / 4e-113 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 306 / 7e-102 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 304 / 7e-101 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038700 [exp] 880 / 0 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 875 / 0 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 752 / 0 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 750 / 0 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 733 / 0 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 709 / 0 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 699 / 0 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 315 / 6e-100 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 307 / 3e-97 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 305 / 5e-96 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10009054 pacid=23173338 polypeptide=Lus10009054 locus=Lus10009054.g ID=Lus10009054.BGIv1.0 annot-version=v1.0 ATGATCACCGGAACAGACTTCTACCACGTAATGACAGCGATGGTCCCACTCTACGTCGCAATGTTCCTCGCGTACGGCTCCGTCAAATGGTGGAAGATCT TCACCCCAGACCAGTGCTCTGGCATCAACCGATTCGTCGCCCTTTTCGCCGTCCCACTCCTCTCCTTCCATTTCATCTCCTCCAACGACCCTTACGCCAT GAACTTCCGCTTCATCTTCGCCGATTCACTCCAAAAACTCATCATCCTCGCCGCCTTAGCCGTCTGGGCCAATCTCTCCCGCCGCGGAACCCTAGAATGG TCGATTACTCTATTCTCCCTCTCCACCCTCCCGAACACTCTCGTAATGGGGATCCCTTTGCTGAAAGGGATGTACGGAGACGAATCTGGAACGCTAATGG TTCAAATCGTCGTCCTCCAGTGTATAATCTGGTACACACTGATGCTGTTCATGTTTGAATTCCGCGGCGCTCGGATTTTGATCTCCGAGCAGTTTCCTGA TACCGCTGGGTCGATTGTTTCGATTCATGTCGATTCGGATATCATGTCGCTCGACGGACGGATGCCGCTGGAGACGGAGGCGGAGATTAAGAGCGACGGG AAGCTCCACGTCACTGTGCGGAGGTCCAACGCTTCCAGATCTGACGTTTTCTCGAGGAGATCGGGGACCGGAGCGACTCCCCGGCCGTCGAATCTGACGA ATGCCGAGATCTATTCGTTGCAGTCGTCGAGGAATCCGACTCCGAGAGGTTCGAGCTTTAACCATACGGATTTCTACTCGATGATGGCCGCCGGTCGGAG CTCTAATTTCGGGGCGAACGACGGCCCCACTCCCAGGCCGTCTAACTACGATGAGGATGGGAAAACGACGTCGTCTGCTGCTGCGAGGTTCGGGTACGGT GGTGGTCCTGCTGGGTCGGGTTATCCCGCTCCGAACCCGGGAATGTTCTCTCCGACTACGGCTGCTGGGAAAGTGAGTAATGTTAAGAAAGGTGGGAAAG AAGACGGCGGCGGTGGAAAGGATCTTCATATGTTCGTTTGGAGCTCCAGTAATTCCCCGGTTTCCGACGTGTTCGGCGGCCATGAGTACGGCGCTGCCGC CGCCGGCGGTGGGAATCATCATCAGCTTGAGCAGAGTAAAGAAGTCCGCCTCGGAGTGTCTCCTGGGAAAGTGGTGGAGCAGAGGGCGGAGGCCGGCGGT GGCGGCCATGGAGGGGAGGAGTATTTAGTCGAGAGAGACGAGTTCAGCTTCGGGAACAGAGAGGCTGAGAATGTGAACGGCGGTGGGGGCGAGAAGGCGA CGGTGAACGGCGGAGGGGATGGGAAGAGCAAAGTGATGCCGCCGACGAGCGTGATGACAAGGCTGATTCTGATAATGGTGTGGAGGAAGCTGATAAGGAA CCCCAATACTTACTCCAGCTTGATTGGTCTAATTTGGTCACTGGTTTCCTTCAGGTGGCATGTAACGATGCCTGCCATTATCGCAAAGTCCATATCCATT CTGTCAGATGCTGGCCTCGGCATGGCCATGTTCAGTCTAGGGTTGTTCATGGCATTGCAGCCGAGGATAATAGCATGCGGGAAAAGAACAGCAACGTATG CAATGGGGGTTAGATTCTTTGTTGGACCAGCTGTAATGGCTGCCGCCTCCATTGTTGTTGGCCTCAGGGGCACTCTCCTCCACATCGCCATTGTCCAGGC AGCACTTCCTCAGGGGATTGTTCCCTTTGTCTTCGCCAAGGAATACAATGTACACCCTGACATTCTCAGCACAGGGGTGATATTCGGGATGCTGATCGCC TTGCCCTTCACACTAGTCTACTACATTTTGCTTGGACTATGA
AA sequence Show only first row Show all	>Lus10009054 pacid=23173338 polypeptide=Lus10009054 locus=Lus10009054.g ID=Lus10009054.BGIv1.0 annot-version=v1.0 MITGTDFYHVMTAMVPLYVAMFLAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYAMNFRFIFADSLQKLIILAALAVWANLSRRGTLEW SITLFSLSTLPNTLVMGIPLLKGMYGDESGTLMVQIVVLQCIIWYTLMLFMFEFRGARILISEQFPDTAGSIVSIHVDSDIMSLDGRMPLETEAEIKSDG KLHVTVRRSNASRSDVFSRRSGTGATPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRSSNFGANDGPTPRPSNYDEDGKTTSSAAARFGYG GGPAGSGYPAPNPGMFSPTTAAGKVSNVKKGGKEDGGGGKDLHMFVWSSSNSPVSDVFGGHEYGAAAAGGGNHHQLEQSKEVRLGVSPGKVVEQRAEAGG GGHGGEEYLVERDEFSFGNREAENVNGGGGEKATVNGGGDGKSKVMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVSFRWHVTMPAIIAKSISI LSDAGLGMAMFSLGLFMALQPRIIACGKRTATYAMGVRFFVGPAVMAAASIVVGLRGTLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIA LPFTLVYYILLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	0	1
AT3G22970			Protein of unknown function (D...		Lus10039397 [exp]	4.0	0.8377
					Lus10003132 [exp]	4.5	0.8816
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	4.9	0.8767
AT5G49100			unknown protein		Lus10006504 [exp]	6.2	0.8133
AT1G52140			unknown protein		Lus10025828 [exp]	6.2	0.8789
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	7.0	0.8081
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	7.5	0.8764
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10015046 [exp]	7.7	0.8587
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	8.1	0.8705
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10037341 [exp]	9.8	0.7817

Compare expression of checked genes

Lus10009054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.