Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77920 386 / 2e-133 bZIP bZIP transcription factor family protein (.1) AT5G65210 365 / 2e-125 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 358 / 2e-122 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 355 / 2e-121 bZIP TGA3 TGA1A-related gene 3 (.1) AT1G08320 275 / 5e-90 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT3G12250 271 / 4e-89 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 270 / 2e-88 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06839 268 / 1e-86 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G06960 263 / 5e-86 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 245 / 3e-77 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031349 [exp] 610 / 0 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10042005 [exp] 531 / 0 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 528 / 0 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10035873 [exp] 304 / 4e-101 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10037550 [exp] 306 / 5e-101 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 298 / 6e-99 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10024140 [exp] 288 / 2e-95 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 281 / 6e-93 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 280 / 1e-92 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170500 [exp] 447 / 1e-157 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 429 / 1e-150 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G085700 [exp] 354 / 6e-121 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 335 / 2e-113 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.006G058800 [exp] 284 / 1e-91 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G039000 [exp] 283 / 1e-91 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 282 / 1e-91 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.009G164300 [exp] 283 / 2e-91 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.001G029800 [exp] 281 / 3e-91 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.004G203400 [exp] 281 / 9e-91 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10009055 pacid=23173335 polypeptide=Lus10009055 locus=Lus10009055.g ID=Lus10009055.BGIv1.0 annot-version=v1.0 ATGATGAGCTCTCCAACAACTCAACTAGCAATCTTGAGAGGAATGGGGATCTACGAGCCATTCCAGCAGATCAGTTCATGGGCAGCTGACCCTTTCAGAG GAGACAACATCCTCAACATCACACCAACTTCCCCAATTCCGCCACTCGATCATCCTCCACCGCCACTCGAAAACCGGACTGATAACATGTCTCATGAGTC CATTACTGAGCCTTCCAAGAGTGATCAAGAAGGTGTAGGTGGCAGACCTTGTGATAACAATAATAATAAGACGCAAAGACGGTTGGCTCAGAATCGAGAA GCTGCCCGCAAGAGCCGGTTGAGGAAGAAGGCTTATGTTCAGCAATTAGAAACAAGCCGTTTGAAGTTGGCACAGTTAGAGCAAGAGCTTCAGAGAGCTA GGCAACAGGGTATGTACATAAACAATGGCATGGATTTCGGAATGCCCGGGACTTCAAGTTCAGGCATAGCGACATTTGAGATGGAATACGCACACTGGAT CGAAGAAGAACACAAAAAAGTATCGGAGCTTCGAAGAGCGTTGCAATCGCACATCGGAGATGTGGAACTAAGAATCCTAGTGGAGAACGGATTGGCACAT TTCAACAGTCTTTTCAGGATCAAAGCAGAGGCAGCCAAGACCGACGTTTTCTACATCATTTCCGGGAAGTGGAGGACCTCCGTAGAGAGGTTCTTCCTCT GGATCGGCGGGTTTCGCCCATCGGAGCTTCTAAACGTTTTATTGCCGCAACTAGAGCCATTGACGGACCAACAACACTGCGAGGTGTGCACTCTCCGACA ATCGAGCCAGCAAGCGGAGGACGCCCTCTCGCAAGGGATCGACAAGCTCCAGCAGACTCTGTCCCAGAGCCTGGCGGTTGACCAGAGCATCGGTGGAAGT TACAGGGTTCAGATGGCTGCAGCCATCGAGAGGCTCGAAGGGCTTGAAGGGTTCGCTAACCAGGCGGATCACTTGAGGAGTCAGACCTTGCACCACATGT CGCGGATCCTCACAACCCGACAAGCTGCTCGCGGGTTGCTTGCGTTGGGAGAGTACTTGGAGCGACTTCGTGCGCTCAGCTCGCTCTGGGCTGCTCGCCC CCTCGAGCCTACATGA
AA sequence Show only first row Show all	>Lus10009055 pacid=23173335 polypeptide=Lus10009055 locus=Lus10009055.g ID=Lus10009055.BGIv1.0 annot-version=v1.0 MMSSPTTQLAILRGMGIYEPFQQISSWAADPFRGDNILNITPTSPIPPLDHPPPPLENRTDNMSHESITEPSKSDQEGVGGRPCDNNNNKTQRRLAQNRE AARKSRLRKKAYVQQLETSRLKLAQLEQELQRARQQGMYINNGMDFGMPGTSSSGIATFEMEYAHWIEEEHKKVSELRRALQSHIGDVELRILVENGLAH FNSLFRIKAEAAKTDVFYIISGKWRTSVERFFLWIGGFRPSELLNVLLPQLEPLTDQQHCEVCTLRQSSQQAEDALSQGIDKLQQTLSQSLAVDQSIGGS YRVQMAAAIERLEGLEGFANQADHLRSQTLHHMSRILTTRQAARGLLALGEYLERLRALSSLWAARPLEPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	0	1
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	3.0	0.7371
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	13.4	0.6802
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	15.1	0.7029
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	15.2	0.7009
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	16.5	0.6880
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	16.5	0.7130
AT3G09470			Major facilitator superfamily ...		Lus10023760 [exp]	18.3	0.6346
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	19.3	0.6889
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	19.6	0.6891
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	25.9	0.6738

Compare expression of checked genes

Lus10009055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.