Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73600 773 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 769 / 0 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 753 / 0 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 74 / 4e-14 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT5G13710 71 / 5e-13 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 65 / 4e-11 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 54 / 1e-07 SMT3 sterol methyltransferase 3 (.1) AT4G33110 52 / 9e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 47 / 3e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G23360 44 / 0.0002 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031348 [exp] 909 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 848 / 0 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 842 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020357 [exp] 73 / 7e-14 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10009537 [exp] 74 / 8e-14 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10023995 [exp] 62 / 2e-10 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 60 / 2e-09 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10022684 [exp] 60 / 3e-09 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029124 [exp] 51 / 8e-07 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047400 [exp] 814 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 806 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047301 [exp] 172 / 7e-51 AT1G48600 213 / 8e-68 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G263700 [exp] 85 / 1e-17 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 76 / 7e-15 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 75 / 3e-14 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.005G245800 [exp] 65 / 5e-11 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.016G056000 [exp] 58 / 9e-09 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.002G016300 [exp] 58 / 9e-09 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.008G188600 [exp] 50 / 2e-06 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10009056 pacid=23173319 polypeptide=Lus10009056 locus=Lus10009056.g ID=Lus10009056.BGIv1.0 annot-version=v1.0 ATGGCGGCTAACGGTGCAGCACCTGTGGTGGAGCGGGAGGTTCAGAAGAGCTACTGGATTGAGCACTCCGTTGATCTGACTGTGGAGTCGATGATGCTCG ACTCCAAAGCCTCCGATCTCGACAAAGAAGAACGGCCTGAGGTATTCCGTTACGTGATTTCTTCGTCGTCTGAGTTTGGATTGCAATTACTCTGTCGTCG TTTTCAGCGTTGCCTAGCAGTCATTTTCTGCGTTTGTGTTTTAAGAATTCACTACTGTGTCAATTTCTACAACGATCCATGGAATCAGTTACTGTTGTTT TCAAAATCTGGTGTTACTCGGTTTCGATTGGTGCTCTCTATGCTCCCACCGTACGAAGGAAAATCGGTGCTGGAACTGGGAGCTGGTATCGGAAGGTTCA CCGGAGAGATAGCTAAGAAGGCTGGCCAAGTTGTAGCTTTGGATTTCATTGATAGCGTGATAAAGAAGAATGAGAACACCAATGGACACTTCAAGAATGT CAAGTTCATGTGTGCTGATGTCACATCCCCAACCCTCAACTTCTCAGAAGGATCCATGGATTTGATCTTCTCCAACTGGCTTCTTATGTACCTCTCGGAT TCCGAGGTGGAGAACCTGGCGGAAAGAATGGTGAAATGGCTGAAAGTTGGAGGGTGCGTCTTCTTTAGGGAGTCCTGCTTCCACCAATCTGGAGATAGCA AGAGGAAATACAACCCAACGCACTACCGTGAACCAAGGTTCTACACAAAGGTCTTTATGGGCAGCCGTATGCAAGATGAATCTGGAGTTTCATACGAGCT CTCCCTTGTGGGATGCAAATGCATCGGAGCTTACGTCAGAAGCAAAAAGATCCAGAACCAGATTTGCTGGATATGGCAGAAAGTCCGTTCCCAGGACGAC AAAGGCTTCCAGCAATTCCTCGACAACGTCCAATACAAATCCACCAGCATCCTTCGCTATGAACGCGTATTCGGGCAAGGCTTTGTCAGCACCGGAGGCT TAGAAACAACGAAAGAATTCGTGTCGAGGCTGGACCTGAAACCGGGGCAAAAAGTCCTCGATGTAGGCTGTGGAATAGGCGGAGGCGACTTCTACATGGC TGAGAACTTCGATGTCGAGGTCGTTGGCATCGACCTCTCGATCAACATGGTCTCATTCGCACTCGAACGAGCCATTGGTTTGAAATGCTCGGTGGAATTC GAGGTTGCTGACTGTACCAAGAAGACATACCCTGACGAGACGTTCGATGTCATCTACAGCCGTGACACGATCCTCCATATCCAGGATAAGCCCACGCTGT TTCAGTCGTTCTACAAGTGGCTGAAGCCCGGTGGGAAGGTGCTCATCAGTGACTACTGTAAGAGTGCTGGAAGTCCTTCGGATGAGTTTGCTGAGTATAT TAAGCAGCGTGGGTATGATCTTCATGATGTCAAAGCTTACGGACAGATGCTGAGAGATGCTGGTTTCCAGGAAGTCGTAGCTGAGGACCGCACAAACCAG TTCAACCAAGTTCTGCAGAGGGAGCTGGATGCTATAGAGAAAGAGAAGCAAACATTCATCAGTGACTTCTCAGAGGAAGACTACAACGATATCGTCGGAG GATGGAAGTCGAAGCTCGTCAGGAGCTCTGCCGGCGAGCAGAAGTGGGGCCTGTTCATTGCCAAGAAGTAA
AA sequence Show only first row Show all	>Lus10009056 pacid=23173319 polypeptide=Lus10009056 locus=Lus10009056.g ID=Lus10009056.BGIv1.0 annot-version=v1.0 MAANGAAPVVEREVQKSYWIEHSVDLTVESMMLDSKASDLDKEERPEVFRYVISSSSEFGLQLLCRRFQRCLAVIFCVCVLRIHYCVNFYNDPWNQLLLF SKSGVTRFRLVLSMLPPYEGKSVLELGAGIGRFTGEIAKKAGQVVALDFIDSVIKKNENTNGHFKNVKFMCADVTSPTLNFSEGSMDLIFSNWLLMYLSD SEVENLAERMVKWLKVGGCVFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFMGSRMQDESGVSYELSLVGCKCIGAYVRSKKIQNQICWIWQKVRSQDD KGFQQFLDNVQYKSTSILRYERVFGQGFVSTGGLETTKEFVSRLDLKPGQKVLDVGCGIGGGDFYMAENFDVEVVGIDLSINMVSFALERAIGLKCSVEF EVADCTKKTYPDETFDVIYSRDTILHIQDKPTLFQSFYKWLKPGGKVLISDYCKSAGSPSDEFAEYIKQRGYDLHDVKAYGQMLRDAGFQEVVAEDRTNQ FNQVLQRELDAIEKEKQTFISDFSEEDYNDIVGGWKSKLVRSSAGEQKWGLFIAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	0	1
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	3.3	0.9043
AT4G01040			Glycosyl hydrolase superfamily...		Lus10029447 [exp]	3.7	0.8613
AT4G39380			unknown protein		Lus10020841 [exp]	5.6	0.8378
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	9.9	0.8553
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	12.9	0.8820
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	14.1	0.8554
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10034972 [exp]	17.1	0.7831
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	17.2	0.8776
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	21.2	0.8294
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	23.2	0.8421

Compare expression of checked genes

Lus10009056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.