Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01860 483 / 2e-168 EMB975 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G79490 60 / 3e-09 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G54980 60 / 3e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 59 / 6e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39230 58 / 1e-08 LOJ LATERAL ORGAN JUNCTION (.1) AT1G20300 57 / 2e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 57 / 2e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 56 / 5e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 54 / 2e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 54 / 2e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031347 [exp] 674 / 0 AT2G01860 395 / 8e-136 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 59 / 5e-09 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 58 / 1e-08 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 57 / 2e-08 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039149 [exp] 57 / 3e-08 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 57 / 3e-08 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041927 [exp] 56 / 3e-08 AT5G18475 341 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001378 [exp] 56 / 4e-08 AT1G10910 818 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 56 / 5e-08 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252300 [exp] 511 / 6e-179 AT2G01860 530 / 0.0 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 58 / 8e-09 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 58 / 1e-08 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G019000 [exp] 57 / 2e-08 AT1G10910 796 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 57 / 3e-08 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.013G150100 [exp] 56 / 3e-08 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123900 [exp] 56 / 4e-08 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G211300 [exp] 56 / 4e-08 AT1G10910 773 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G173400 [exp] 56 / 4e-08 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 56 / 5e-08 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009057 pacid=23173321 polypeptide=Lus10009057 locus=Lus10009057.g ID=Lus10009057.BGIv1.0 annot-version=v1.0 ATGGAGGCTCAATCATTCTCCATCACATTAACCCCGCGCTTCACATCCACAACTCGAATCCATTACAAAAACCTCCGCAAAAACCACCAATCACCCCGAC GAACAAAGCTCCCTCCAGATTTCGGCGTCAATCTCTTCCTCAAAAAACCCCCCACTCCTCCCTTCACCGAACCCATAATCAACCCTACCGCCGCCGCTGC CGCCGAAGAAGACGAAGACGACGACCCAGAAGAGGAAAATAACGACCGAATCGACTGGGAGGAAGAAGAAATCGAAGCGATTACATCTCTATTCCAACGC AGGATCCCACAGAAGCCGAACAAGTCAACCAACCGGGTAAGACCTTTACCGCTTCCGGTTCCTCACATGATGACCCGACCCGAGAAGCTCCCTTCACAAA AGAAACGTTTTAATCCCGTTTCGAATCAGTTTCACAAAGACCCTGTCTTCCTGGTAGACTTGGCTAAGCAGATTAGTAAGCTGAGCCCTGACCAGAATGC TGACATAGTGCTCGAAAGATCATCGCATTTCCTGCGGAAGGGTTCGCTATCAATGACGATTCGTGAGCTGGGCCACATGGGATTGCCCAGCAGAGCTTTG GAGACGCTCTGCTGGGCGCAGAAGCAGGAACATCTCGTTCCTGACGACAGAACGCTGGCATCCACGGTGGAGGTTCTGGCGAGGAATCGCGGGTTGAAAG TGCCTGCTTTCGATTGGGTGAGGATGGTGAAGCTGGCGAGTAGGAACGTGATCGAATCGATGATTCGAGGGTTTGTTAAAGGTGGCAGCTTGCAGCTTGC ATTGAAGCTGTTGACGGTTGCCAAGCAGGAGAGGAGAGTGTTGGATGCTGGCTTGTATGCCAAGTTAGCTTTGGAGCTGGTGAAGAATCCTGATAAGGTC AGGATTGTCGAGGCATTGCTCGAAGAGCTGGCCGAAATGGGAGAGAATCAAGAGATGAAGCTGAGCCAGCAGGATTGTACTTCGCTGATGAAGGTTGGCG CGAAGCTCGGGAAGTTTGATCTCGTGGAAGGGTTGTTCGAATGGTTTACAACAACTCAGAAGAAGAAGCCGGGCGTGGTTATGTACACTACGTTGATCCA TAGCCGGGTTTCGGAAGGGAGGTATCGGGAGGCGCTGGCTGTGGTGTGGGAGATGGAAGGTGAAGGGTGCTTGTTGGATCTGCCGGCTTATCGGGTGGTG ATTAAGCTATTTGTTGCCGCAAACGATGTGGCGAGGGCTTCTCGATACTTTTCGAAGATGAAGGATGCCGGGTTTGCTCCGAGTTATGATGTGTATAAGG ATATGGTTAAGGTTTATATGTTTTCTGGGAGGGTGGCTAAGTATAAAGAGGTTTGGAAGGAGGCCGAGATGGCTGGGTTTAGGTTCGATAGGGAAATGTG TTTGCTGTTGATGCAGCTTGATCAACAAGGTTCCGTGAACTGA
AA sequence Show only first row Show all	>Lus10009057 pacid=23173321 polypeptide=Lus10009057 locus=Lus10009057.g ID=Lus10009057.BGIv1.0 annot-version=v1.0 MEAQSFSITLTPRFTSTTRIHYKNLRKNHQSPRRTKLPPDFGVNLFLKKPPTPPFTEPIINPTAAAAAEEDEDDDPEEENNDRIDWEEEEIEAITSLFQR RIPQKPNKSTNRVRPLPLPVPHMMTRPEKLPSQKKRFNPVSNQFHKDPVFLVDLAKQISKLSPDQNADIVLERSSHFLRKGSLSMTIRELGHMGLPSRAL ETLCWAQKQEHLVPDDRTLASTVEVLARNRGLKVPAFDWVRMVKLASRNVIESMIRGFVKGGSLQLALKLLTVAKQERRVLDAGLYAKLALELVKNPDKV RIVEALLEELAEMGENQEMKLSQQDCTSLMKVGAKLGKFDLVEGLFEWFTTTQKKKPGVVMYTTLIHSRVSEGRYREALAVVWEMEGEGCLLDLPAYRVV IKLFVAANDVARASRYFSKMKDAGFAPSYDVYKDMVKVYMFSGRVAKYKEVWKEAEMAGFRFDREMCLLLMQLDQQGSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	0	1
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	2.6	0.8401
AT3G57120			Protein kinase superfamily pro...		Lus10038716 [exp]	2.8	0.8049
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10007105 [exp]	8.2	0.7726
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	11.8	0.8085
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	12.1	0.8221
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	12.2	0.8120
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	12.8	0.7745
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	14.6	0.8164
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	15.3	0.7474
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	16.1	0.7683

Compare expression of checked genes

Lus10009057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.