Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73620 376 / 3e-133 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 365 / 3e-129 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 263 / 5e-89 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 259 / 1e-87 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 258 / 1e-85 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75040 254 / 2e-85 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G19320 254 / 3e-85 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 244 / 2e-80 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G77700 242 / 3e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 240 / 8e-79 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032726 [exp] 252 / 1e-84 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10003962 [exp] 248 / 8e-83 AT5G02140 387 / 4e-137 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 249 / 2e-82 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 249 / 4e-82 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 243 / 4e-80 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 242 / 4e-80 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 243 / 5e-80 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10023785 [exp] 241 / 1e-79 AT5G02140 379 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017266 [exp] 241 / 4e-79 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047800 [exp] 391 / 2e-139 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G039200 [exp] 387 / 9e-138 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 268 / 2e-89 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 267 / 4e-89 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.014G040700 [exp] 259 / 2e-87 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.005G112600 [exp] 251 / 4e-83 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 249 / 1e-82 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 248 / 8e-82 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020500 [exp] 244 / 1e-80 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 243 / 2e-80 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10009058 pacid=23173379 polypeptide=Lus10009058 locus=Lus10009058.g ID=Lus10009058.BGIv1.0 annot-version=v1.0 ATGAACTCTCCGGCGACTCTCCTCCTCCTCACCCTCGTCGTCCTCATCTCTCAAAATGCAGTTTCATCAACGACCGTGACGTTCCTGAACAAATGCGGCC ACCCAGTGTGGCCGGGGATCCAGCCTGGAGCAGGAAAGCCGATCCTCGCCCGCGGAGGATTCCACCTCGCGCCGAACAAGCCGTTCACTATGGCTCTGCC AGATCTCTGGTCCGGAAGGTTCTGGGGCCGCCACGGCTGCTCATTCGATGCTTCCGGCCGAGGCCGCTGCGCTACCGGAGACTGCGGTGGCTCGCTCTAC TGCAACGGTATGGGTGGGTCGCCGCCGGCGACTCTGGCGGAGATCACTCTGGGACATGACCAGGACTTCTATGATGTCAGCCTCGTCGACGGGTACAACA TTCCGATGGCGGTTAAGCCGGTGAAGGGTACCGGAAAGTGTAGCTACGCCGGTTGCGTCAGCGATCTGAACTTGATGTGCCCCGCCGGACTTCAGGTCCG GTCACGCGACAGCAGGAGTGTGGTTGCGTGCAGGAGTGCATGCTCGGCATTCAACTCGCCGAGGTACTGCTGTACGGGGGCTTTCGGGAACCCACAGACG TGCAAGCCGACCGCCTATTCGAGGATCTTCAAGGCGGCTTGCCCAAGGGCTTACTCGTACGCTTACGATGATCCGACAAGCATTGCTACTTGCACCGGAG GGAACTACATTGTCACCTTCTGCCCTCCTCGCCGCCGGTGA
AA sequence Show only first row Show all	>Lus10009058 pacid=23173379 polypeptide=Lus10009058 locus=Lus10009058.g ID=Lus10009058.BGIv1.0 annot-version=v1.0 MNSPATLLLLTLVVLISQNAVSSTTVTFLNKCGHPVWPGIQPGAGKPILARGGFHLAPNKPFTMALPDLWSGRFWGRHGCSFDASGRGRCATGDCGGSLY CNGMGGSPPATLAEITLGHDQDFYDVSLVDGYNIPMAVKPVKGTGKCSYAGCVSDLNLMCPAGLQVRSRDSRSVVACRSACSAFNSPRYCCTGAFGNPQT CKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGGNYIVTFCPPRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	0	1
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	1.0	0.9884
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10012910 [exp]	2.0	0.9777
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	2.8	0.9824
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	3.0	0.9565
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	3.5	0.9792
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	4.5	0.9745
AT3G29300			unknown protein		Lus10034904 [exp]	5.5	0.9655
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	6.3	0.9632
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10030564 [exp]	6.5	0.9454
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	7.7	0.9510

Compare expression of checked genes

Lus10009058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.