Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18210 192 / 3e-63 Calcium-binding EF-hand family protein (.1.2) AT1G73630 188 / 1e-61 EF hand calcium-binding protein family (.1) AT1G66400 149 / 3e-46 CML23 calmodulin like 23 (.1) AT5G37770 142 / 1e-43 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 126 / 4e-37 EF hand calcium-binding protein family (.1) AT2G15680 120 / 8e-35 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT1G05990 115 / 4e-33 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT5G21274 114 / 7e-33 ACAM-6, CAM6 calmodulin 6 (.1) AT3G43810 114 / 1e-32 CAM7 calmodulin 7 (.1) AT2G41110 114 / 1e-32 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031345 [exp] 308 / 1e-108 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10018012 [exp] 220 / 5e-74 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10027081 [exp] 184 / 6e-60 AT1G18210 131 / 2e-39 Calcium-binding EF-hand family protein (.1.2) Lus10042008 [exp] 147 / 8e-46 AT1G18210 138 / 1e-42 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 142 / 3e-42 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10004330 [exp] 124 / 2e-36 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 122 / 8e-36 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10014050 [exp] 122 / 3e-35 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10009564 [exp] 120 / 3e-35 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048200 [exp] 199 / 4e-66 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 193 / 2e-63 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 147 / 8e-46 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 147 / 2e-45 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.008G134300 [exp] 128 / 1e-37 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.010G107100 [exp] 127 / 2e-37 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.009G102500 [exp] 120 / 8e-35 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.015G032600 [exp] 117 / 8e-34 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 116 / 2e-33 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.002G239100 [exp] 115 / 4e-33 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009059 pacid=23173371 polypeptide=Lus10009059 locus=Lus10009059.g ID=Lus10009059.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAGCACTGGCCAACGCAACCACCGCCCCAACCGCCACCGCCGCGGCCGAGGCAGCAGCCTACCTCCAGAACATGGACGAGCTGAAGAAGG TGTTCTCCAAGTTCGACGCGAACGGCGACGGCAAGATCTCGCTCGCGGAGCTGGCGGACGTCCTCAGATCCATGGGATCCAGCTACTCTCCTCTTGACCT GCAGCGCGCCATGGACGACATCGACACCGACAAGGATGGCTTCATCAACTTGGATGAGTTCGCGGAGCTCTGCCGCTCGTCTTCCGGAGCGTCCGCGGCG GCGGAGCTTCACGAGGCGTTTAATCTGTATGATGAGGATAAGGACGGGCTGATATCCAGCTCGGAGCTCCACCACGTGCTGAATCGGCTGGGGATGAAGT GCTCGATGGAGGAGTGCGGGAGGATGATTCAGGGAGTTGATTCTGACGGAGACGGCTGCGTTAATTTTGAGGAGTTTGAGAAGATGATGGCGGCCAACGG TGAAGCTACTGCTCCGGCGGTGAATTAG
AA sequence Show only first row Show all	>Lus10009059 pacid=23173371 polypeptide=Lus10009059 locus=Lus10009059.g ID=Lus10009059.BGIv1.0 annot-version=v1.0 MAESALANATTAPTATAAAEAAAYLQNMDELKKVFSKFDANGDGKISLAELADVLRSMGSSYSPLDLQRAMDDIDTDKDGFINLDEFAELCRSSSGASAA AELHEAFNLYDEDKDGLISSSELHHVLNRLGMKCSMEECGRMIQGVDSDGDGCVNFEEFEKMMAANGEATAPAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	0	1
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	2.6	0.9175
AT1G76600			unknown protein		Lus10037249 [exp]	2.8	0.9134
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	4.2	0.8827
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	8.9	0.8800
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	9.0	0.8030
AT1G75800			Pathogenesis-related thaumatin...		Lus10013560 [exp]	9.4	0.7800
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	9.5	0.8564
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	13.6	0.8504
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	15.0	0.8499
AT1G29290			unknown protein		Lus10029256 [exp]	15.4	0.8254

Compare expression of checked genes

Lus10009059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.