Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18190 398 / 1e-129 GC2 golgin candidate 2 (.1) AT2G19950 64 / 3e-10 GC1 golgin candidate 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031344 [exp] 671 / 0 AT1G18190 301 / 5e-93 golgin candidate 2 (.1) Lus10012966 [exp] 59 / 1e-08 AT2G19950 716 / 0.0 golgin candidate 1 (.1.2) Lus10034941 [exp] 54 / 3e-07 AT2G19950 685 / 0.0 golgin candidate 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039800 [exp] 535 / 0 AT1G18190 509 / 1e-172 golgin candidate 2 (.1) Potri.018G086600 [exp] 63 / 4e-10 AT2G19950 626 / 0.0 golgin candidate 1 (.1.2) Potri.006G164350 [exp] 44 / 0.0001 AT2G19950 327 / 3e-108 golgin candidate 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009060 pacid=23173342 polypeptide=Lus10009060 locus=Lus10009060.g ID=Lus10009060.BGIv1.0 annot-version=v1.0 ATGTCGAACTGGATCTCCTCCAAGCTCAGAGTCGCCGAAACCTTCTTCGAGCAGGCAAATTCTCTCTTCCTCTCCCGCTATCTCCACATTGATCAGCAAG CGGCGGAGTCATTGAAGAAGAACGAAGGGGCGAGATCTGAGGATCTGAAGCTTGACGTCCGTGAGAAAGGACGAGGCTCTGTGTCGTTGAAAGATCAGCT GAGGAAGAAGAATTCGTCCTCGTCGTCGTCGTTTTCTCCTGAAGGCGGCGATGTTAGGGATGAATTGATCGGGAAACGGAGTGCGGATCCTGTGGCTGGG AGCAGTATTGGTTATCGGAAGGGCGATGGAGATAAGGAGAAGGATGTTTTGATATCGGGAAAAGCTAAGCCTACTATGACAGATAGTGATTGGACTGCGC TTCTAGGTAGTCCTAGTCCTCTTTCGACTTCTTCGAATCGGAGTGGAGGAGGAGGAGTTGCTGGGATTCGTGGTCTGAGGAAGGATTTTAGGAGACAGGT GAGCAGTGAAGGGAAGAGGAATGTGAAGGCTAGTAATTTGGAAAGTGGTGTAAGGTCGAATAGGAGGCCGGATGCTGTGTTGGCGAATAAGATTGTTGCG AAACCGAGCGATGGAGATTCATCTCCATCTAGCTCGTCTGCTAGGTCTTCAAATGTCGAACTGCAGAGTGATGTGAAGGGTTTTGATAGGCAGGAGGTGG AGAGAAAGGAGGTTCAGTCTGGGGAGATTGCTGATGTTGCAGTTTCGAACTTAGGGAGGACGGATCGAAACTTGGTTGTGTCACCAGTGTCTGATGTGAA GAAGGGAGCAGGTGGTGTTTACGATCGATTGAGAAGTACAGTAAAGGGTAAACGTAAGGCTGTAGTAGAGTCGAAACGTTTGGTGTCTGATGATGTGAAA AGAGGTTCTTCATACTCTAGTAACGGGGGATCTGATTTGGGAAGTGAGTCTGATTCGGGAAGTGAGACTGATTCTGAGGATGAACGAGAAAGGGAGAGGA GGGAGAAGATATTGGCTGAGAAAGCAATAGCAAAAGCTGCAGAGGCGGTTAAAGAGCGGGAGAACTATGTTGCTAGATTGGAAGGCGAGAAGCAGAGTTT GGAGAAGATACTTGAAGAGCGGGCAAAGCAAGCAGCTGAAGAGGCTTCAGAGCTTCAAACAACTATGATGGAGACTATGGAAGCTGCTGATGTGGAACAC GAGAAACATAAGAACACTAGAATGGAAGCCCTTGCTCGATTGGCTAAATTGGAGACTGCGAATGCTGATCTTTCAAGATCTCTAGCTACTGTACAGAAGA ATCTGGAGATAGAGATTAATCGAGTGGCAGAACTGAGACAAGAAGTCGAGTTAAAAGAAGTGGCAGTTGAAGAGTTGAGGAGGAAGATTTCCGGGACTCA GCAGGCAGCAACACAAATCAACCAATCGGGCACTTCAAAAGGGGTTGAATTTGAACGAGAAATTCTCGAGGCCGAGTGCTCTTTCCTAGCTGATAAAATT GGAAGACTGGCGGACAAGGCAAAAAAGCTGGAAGCAGATATTGAAGTAACGAGAAAAGACCTGGAAGAACCAACAGAAGTAGAAATTGAGCTAAAGCGAA GGCTCGGGCAGTTGACCGATCATTTAATCCAGAAACAAGCCCAGGTCGAGGCACTTTCGTCCGAGAAGGCAACTCTCTTCTTCAGAATTGAGGCAGTTAC AAGGTCCCTTGAAGAGAACAAGTCGACAACGAGCAGTCCCAACGACATGGAATCAGGAACGTGGGGGCAGAGAGCCAACGAGAGGCGACGTGTGCTCGAG GACAAGCTCCGATCAGGGAGGAAACACCTGGGGTCATTACTGGAGCAGCTGGACGCGATCTTCGTCGCTGGAGCAGTGTTCCTGAGGAGGAACCCGAGCG CGAAGATGTGGGCTTGCGGGTACCTCGTTTGCCTTCACTTCTGGGTCATATACATACTAACCTCGCAGTCCGACACAGCGCCGGAGGAAAGATCCGGTGC TGTCATTTCCCTGGAGAACATCAACAACACTGGCGCTGTATAG
AA sequence Show only first row Show all	>Lus10009060 pacid=23173342 polypeptide=Lus10009060 locus=Lus10009060.g ID=Lus10009060.BGIv1.0 annot-version=v1.0 MSNWISSKLRVAETFFEQANSLFLSRYLHIDQQAAESLKKNEGARSEDLKLDVREKGRGSVSLKDQLRKKNSSSSSSFSPEGGDVRDELIGKRSADPVAG SSIGYRKGDGDKEKDVLISGKAKPTMTDSDWTALLGSPSPLSTSSNRSGGGGVAGIRGLRKDFRRQVSSEGKRNVKASNLESGVRSNRRPDAVLANKIVA KPSDGDSSPSSSSARSSNVELQSDVKGFDRQEVERKEVQSGEIADVAVSNLGRTDRNLVVSPVSDVKKGAGGVYDRLRSTVKGKRKAVVESKRLVSDDVK RGSSYSSNGGSDLGSESDSGSETDSEDERERERREKILAEKAIAKAAEAVKERENYVARLEGEKQSLEKILEERAKQAAEEASELQTTMMETMEAADVEH EKHKNTRMEALARLAKLETANADLSRSLATVQKNLEIEINRVAELRQEVELKEVAVEELRRKISGTQQAATQINQSGTSKGVEFEREILEAECSFLADKI GRLADKAKKLEADIEVTRKDLEEPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLFFRIEAVTRSLEENKSTTSSPNDMESGTWGQRANERRRVLE DKLRSGRKHLGSLLEQLDAIFVAGAVFLRRNPSAKMWACGYLVCLHFWVIYILTSQSDTAPEERSGAVISLENINNTGAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10009060 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10025434 [exp]	5.0	0.9044
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10029900 [exp]	5.1	0.8764
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	7.5	0.9036
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	13.0	0.8558
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	13.3	0.8815
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	13.6	0.8588
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	14.3	0.8891
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	15.4	0.9004
AT5G54165			unknown protein		Lus10023231 [exp]	17.9	0.8709
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	19.7	0.8892

Compare expression of checked genes

Lus10009060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.