Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73650 403 / 2e-142 Protein of unknown function (DUF1295) (.1), Protein of unknown function (DUF1295) (.2), Protein of unknown function (DUF1295) (.3), Protein of unknown function (DUF1295) (.4) AT1G18180 402 / 5e-142 Protein of unknown function (DUF1295) (.1) AT2G46890 63 / 3e-11 Protein of unknown function (DUF1295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031343 [exp] 523 / 0 AT1G73650 435 / 4e-155 Protein of unknown function (DUF1295) (.1), Protein of unknown function (DUF1295) (.2), Protein of unknown function (DUF1295) (.3), Protein of unknown function (DUF1295) (.4) Lus10009861 [exp] 59 / 8e-10 AT2G46890 456 / 2e-162 Protein of unknown function (DUF1295) (.1) Lus10010291 [exp] 56 / 9e-09 AT2G46890 425 / 3e-150 Protein of unknown function (DUF1295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039900 [exp] 429 / 7e-153 AT1G18180 405 / 4e-143 Protein of unknown function (DUF1295) (.1) Potri.014G109200 [exp] 64 / 1e-11 AT2G46890 456 / 1e-162 Protein of unknown function (DUF1295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF06966 [flax] [poplar] DUF1295 Protein of unknown function (DUF1295)
Representative CDS sequence Show only first row Show all	>Lus10009061 pacid=23173331 polypeptide=Lus10009061 locus=Lus10009061.g ID=Lus10009061.BGIv1.0 annot-version=v1.0 ATGGGAACCGTCCTGGATTCTCATTTCCTTGCTCTTACCGCCATCGTTACTGTGGGTTATCAGCTGCTGTTCTTCATTGTCACAGCTCTTCTCAAGTTCG ATAAAGTCACTGACTTTGCTGGAAGCACGAATTTCATTCTGATTGCTGTGCTGACCATCATTCTCAAAGGAACATGGTATTTCAGACAGGTAGTTTTGAC TGTTCTTGTAGTCATATGGGGCCTCCGTCTCGCCGTGTTTCTACTTATGAGGATATTGCAGTGGGGGGAGGACAGGCGTTTCGACGAAATGCGGAGCAAT TTGGGGAAGCTAGCAGTTTTCTGGACATTCCAGGCTATCTGGGTCTGGACAGTGAGCTTACCAGTGACAGTGGTGAATTCAAGTGACAGAAACCCAGGGT TCGAGATTCGAGACGTAATCGGGTGGATCATGTGGTCGGTTGGTGCCTCGTTCGAAGCCACTGCTGATCAGCAGAAGCTGGCTTTCAAGAACTCCCCCGA GAATCGTGGGAAATGGTGCAATGTAGGCGTCTGGAAGTACACTCGCCACCCCAACTATTTCGGAGAGCTTTTCCTATGGTGGGGAATCTTTGTAGCATCT GCACCAGTGCTCAAAGGTGCTGAATGGCTGGTAATCCTGGGACCGATCTTCCTGACATTGCTGCTCCTCTTCCTCAGCGGCATACCACTTCTCGAGGATT CTGCTGACAAGAAGCATGGCAGTGTAGCTGCATACAGAATATACAAAAGGAGGACAAGCCCTCTAATCCCGCTGCCTCCATCGATGTACGAGCACCTGCC ATCGTGGTTCAAGTCGGTGTTTCTGTTTGAGCTCCCCTTGTACAGCCGTAGCCTTCCTCCTGAAGGTTCAATATGGTGA
AA sequence Show only first row Show all	>Lus10009061 pacid=23173331 polypeptide=Lus10009061 locus=Lus10009061.g ID=Lus10009061.BGIv1.0 annot-version=v1.0 MGTVLDSHFLALTAIVTVGYQLLFFIVTALLKFDKVTDFAGSTNFILIAVLTIILKGTWYFRQVVLTVLVVIWGLRLAVFLLMRILQWGEDRRFDEMRSN LGKLAVFWTFQAIWVWTVSLPVTVVNSSDRNPGFEIRDVIGWIMWSVGASFEATADQQKLAFKNSPENRGKWCNVGVWKYTRHPNYFGELFLWWGIFVAS APVLKGAEWLVILGPIFLTLLLLFLSGIPLLEDSADKKHGSVAAYRIYKRRTSPLIPLPPSMYEHLPSWFKSVFLFELPLYSRSLPPEGSIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18180			Protein of unknown function (D...		Lus10009061 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	10.0	0.7659
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	14.7	0.7605
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	21.0	0.7533
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	24.9	0.7401
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	25.5	0.7481
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10011002 [exp]	26.1	0.6708
AT1G65295			unknown protein		Lus10026997 [exp]	39.4	0.6901
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	40.0	0.7236
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	40.2	0.7238
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	47.5	0.6886

Compare expression of checked genes

Lus10009061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.