Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11850 633 / 0 Protein kinase superfamily protein (.1) AT1G18160 464 / 2e-147 Protein kinase superfamily protein (.1) AT1G73660 464 / 3e-147 protein tyrosine kinase family protein (.1) AT1G08720 413 / 7e-129 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G03730 335 / 9e-101 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT5G49470 323 / 4e-100 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06630 317 / 1e-95 protein kinase family protein (.1) AT4G24480 323 / 2e-95 Protein kinase superfamily protein (.1) AT3G06620 317 / 1e-94 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 313 / 3e-93 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031341 [exp] 1343 / 0 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10038955 [exp] 539 / 2e-176 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10027247 [exp] 519 / 2e-168 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10004124 [exp] 415 / 3e-130 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 414 / 4e-130 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10023865 [exp] 330 / 2e-98 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 329 / 3e-98 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10016912 [exp] 322 / 1e-96 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 319 / 4e-95 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040100 [exp] 484 / 2e-154 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 471 / 1e-149 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.006G229400 [exp] 410 / 2e-127 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 410 / 2e-127 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 408 / 9e-127 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 407 / 3e-126 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 340 / 2e-101 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.005G153100 [exp] 340 / 3e-101 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 333 / 8e-100 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G105100 [exp] 324 / 3e-97 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10009062 pacid=23173361 polypeptide=Lus10009062 locus=Lus10009062.g ID=Lus10009062.BGIv1.0 annot-version=v1.0 ATGCCAAATCGTATGAGAAATCTGTTCAAGAAGCTTCATGCTAGTAATACTAATTCCAGTCAACATGAAGATGCATCAGAAGGGTCAACAACTACTTCAT CATCAAGAGGAAGTAAGCTAGCTGATGTTTCATCTTCCGTTTCCGACCACAAACCGTTTTCTGGCATTTCGAATTGGTTGAACTCCGTTACCAATAGTAG TAGGAAGAGCCCTAGTCCACCTTCCTCATCGAATGTACCGCGAGGTTCGGAGAGGATGGTAGTGAAACCATCTGATGCAGTTTCGGATGTTGCTGCATCA TCGAATTCAGTGACGGTGGTTCGAGATTCCGGAGGTCCTGAGATTGATGAGGAGTATCAAATACAATTGGCTTTGGAGATGAGTGCCGTTGAGGATCCTG AGGCTGCTCAGATTGAAGCTGTCAAGCAAATTAGTTTGGGGTCTTCTCACCCTGAGAATTCTCCTGCTGAGGTTCTTGCTTATCGTTACTGGAATTACAA TGCTCTAAGCTACGACGACAAGATCTTGGATGGTTTTTACGACTTGTATGGAGTACTGACCGATTTGCAGTCGGACAAAATGCCTTCTTTGCTTGAGCTG CAAGGAACTCCGGTTTCGGAGAGTAGTATGTGGGAGGCAGTTCTGGTTGACAAGGCTGCCGATGCGAATCTACTTAAGCTTGAGCAGAAGGCACGAGAAA TCGCCATTGAGCTAAGATCGGAGTCTCCAGCTTTCAAAGACTCCAATTTGGTCAAGAGACTAGCTACCTTGGTTTCTAACTACATGGGGGGATCAGTTGG AGACCCTGAGAACATGTCGAGAGCTTGGCAACGTCTTAGCTACAGCTTGAAAGCCACCCTCGGTAGCATGGTTCTTCCGTTAGGGTCTCTAACGATCGGA ATGGCGCGTCATCGAGCATTGATGTTCAAGGTTTTCGCTGATAGCGTGGGCATACCTAGCCGGTTGGTGAAAGGACATCAGTTCACTGGTTCTGATGACG TGGTCATGAACTTCGTGAAACTTGACGATGGAAGGGAGTACATTATTGATCTAATGGCAGATCCCGGGACTCTAATTCCTTCCGATGCGGCCGGATTAAA CATGATGAACGATAACTTTTGCTTCTCGGCCAGCTCTCTGTCTCATCTAGCCTCTTCTAGTAGTGGAGCGGCAAGTTCATTAGCAGAGATTCCGGATTCG GTGAACTTAAGATTCCCCATTAGTGGCAATGTAGAATCCAGGAGCTCCCCCGACGAGCGGAGGCAAAACTATCCTTACGCCCATGCGAGGTCACCTTCAT GGACCGAAGGCATAACCCCAGCGGCACGTAAGAAGAAAGTGAAAGACGTCTCGCGATACATGATCGATGCCGCCAAGGAGAATCCTCAGCTGGCTCAGAA GCTTCACGATGTGCTGCTAGAGAGTGGTGTCAACGCGCCGCCTAGCTTGTTTACTGAGTTTGAGCAGTTGAGTCTTCCGTCTACCGAAATCGAGCCTACA AAGGAGAAGGACGATCTTCTTCCGAAGCCGCCTCGATTCTTACCGCCTCTGCCTCAACTTCAGTCTGAAGCAACTGCTCCGAATTACGTGAAGAACGTTC CAGCAGCCGCTGCAGCAGCACGCCGGTGCAGCCTGTTTCTGCGGCTGTCAGGGGAGAGAGTATCTGATCGATCGACGGGTAATGATAGCAGCTCGAAGGC GGATCATTTCACGCTAGACGATGTTGCAGAGTGTGAGATTCCGTGGGAAGAAATCACCGTGGGTGAACGCATTGGACTTGGGTCGTACGGTGAAGTCTAC CACGGAGAATGGCATGGAACTGAAGTTGCTGTGAAGAAGTTCCTAGTTCAGGATATTTCCGGGGAATTGTTAGCGGAGATCAAAAGCGAGGTTCAGATCA TGAAGCGGCTTAGACATCCAAATGTGGTTCTATTCATGGGAGCAGTGACACGTTCCCCGAATCTTTCGATCGTCACGGAGTTTCTTCCTAGAGGTAGCTT GTACAGATTACTTCACCGGCCGAACAATCAACTCGACGAGAGAAGGCGATTGAAGATGGCAATCGATGCAGCTAGGGGAATGAACTATCTACACAGCTCT ACGCCAGTAATCGTACATCGCGATTTAAAGTCTCCAAATCTCTTAGTTGACAAAAACTGGGTTGTGAAGGTGTGTGATTTCGGTCTATCAAGAATGAAGC ACAGCACATTCCTCTCGTCAAAGTCGACGGCAGGAACTGCCGAGTGGATGGCTCCAGAAGTGCTAAGAAATGAACCTTCAGATGAAAAATGTGATGTCTA CAGCTATGGAGTCATACTCTGGGAGCTCTGCACAATGCGGCAACCTTGGGGAGGGATGAACCCGATGCAGGTAGTTGGGGCCGTAGGGTTCCAGCACCGG CGACTCGACATCCCTGCCGACATGGATCCTGCCATTGCTGACATCATTCGGAGCTGCTGGCAAACACCACCGCCATTTCCAATCCAACCCAGGAGCTTCA CCATCAACAACATTAACATCAATAGCAGCAGTAGCAGTAGCTATACAGTGCTGTGTTCACCTTCGTCGTCATCGTCGAATCAAACTCCGTCAAGCGATTC CTATTCGGCTGAAGAGAAGAAGATTCCATCGCCGTCTCCGCCTCCGCCGGCGGCGGCTGCTAGCGGTAGGGACAGCAAAAGGACAAAAACTGAGAGTACT GACTGGATAGCATCAAGCTTGACCAGAAGGTTTGGGCTCGGGGCCGGATTGGGCTGGGCCGGGTTTCTGGCTGCCGGGGTGATATCCGAACTGAATTTGT TGAGTATTCACGCAATCCGTCCAATAAAAAACCGCAGGTACTACAAGCTGAAAGTGGGGGGAGGGGCGAAGGCGATGACCGGCGACCTGGTGGTGATCGA CTTGAAAGGGAGGGTACTCAACGATGAAGCGGACTTTGTGGACACGTTCGAAACGAAGAAGCCGCTCGCTCTGGTGATGGGTTAG
AA sequence Show only first row Show all	>Lus10009062 pacid=23173361 polypeptide=Lus10009062 locus=Lus10009062.g ID=Lus10009062.BGIv1.0 annot-version=v1.0 MPNRMRNLFKKLHASNTNSSQHEDASEGSTTTSSSRGSKLADVSSSVSDHKPFSGISNWLNSVTNSSRKSPSPPSSSNVPRGSERMVVKPSDAVSDVAAS SNSVTVVRDSGGPEIDEEYQIQLALEMSAVEDPEAAQIEAVKQISLGSSHPENSPAEVLAYRYWNYNALSYDDKILDGFYDLYGVLTDLQSDKMPSLLEL QGTPVSESSMWEAVLVDKAADANLLKLEQKAREIAIELRSESPAFKDSNLVKRLATLVSNYMGGSVGDPENMSRAWQRLSYSLKATLGSMVLPLGSLTIG MARHRALMFKVFADSVGIPSRLVKGHQFTGSDDVVMNFVKLDDGREYIIDLMADPGTLIPSDAAGLNMMNDNFCFSASSLSHLASSSSGAASSLAEIPDS VNLRFPISGNVESRSSPDERRQNYPYAHARSPSWTEGITPAARKKKVKDVSRYMIDAAKENPQLAQKLHDVLLESGVNAPPSLFTEFEQLSLPSTEIEPT KEKDDLLPKPPRFLPPLPQLQSEATAPNYVKNVPAAAAAARRCSLFLRLSGERVSDRSTGNDSSSKADHFTLDDVAECEIPWEEITVGERIGLGSYGEVY HGEWHGTEVAVKKFLVQDISGELLAEIKSEVQIMKRLRHPNVVLFMGAVTRSPNLSIVTEFLPRGSLYRLLHRPNNQLDERRRLKMAIDAARGMNYLHSS TPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSKSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELCTMRQPWGGMNPMQVVGAVGFQHR RLDIPADMDPAIADIIRSCWQTPPPFPIQPRSFTINNININSSSSSSYTVLCSPSSSSSNQTPSSDSYSAEEKKIPSPSPPPPAAAASGRDSKRTKTEST DWIASSLTRRFGLGAGLGWAGFLAAGVISELNLLSIHAIRPIKNRRYYKLKVGGGAKAMTGDLVVIDLKGRVLNDEADFVDTFETKKPLALVMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	0	1
AT5G40740			unknown protein		Lus10014617 [exp]	1.0	0.8314
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10028139 [exp]	2.8	0.8109
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	5.1	0.8263
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10035085 [exp]	7.6	0.6988
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	8.1	0.8188
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10028877 [exp]	9.5	0.7851
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	9.5	0.7925
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	13.5	0.7441
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	13.6	0.7464
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	14.5	0.7645

Compare expression of checked genes

Lus10009062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.