Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09560 824 / 0 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) AT5G42870 419 / 2e-132 ATPAH2 phosphatidic acid phosphohydrolase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025284 [exp] 1541 / 0 AT3G09560 946 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10021733 [exp] 325 / 1e-96 AT5G42870 432 / 5e-136 phosphatidic acid phosphohydrolase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081000 [exp] 954 / 0 AT3G09560 870 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.006G214800 [exp] 945 / 0 AT3G09560 845 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.014G031000 [exp] 359 / 9e-109 AT5G42870 468 / 1e-148 phosphatidic acid phosphohydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04571 [flax] [poplar] Lipin_N lipin, N-terminal conserved region CL0137 [flax] [poplar] HAD PF08235 [flax] [poplar] LNS2 LNS2 (Lipin/Ned1/Smp2)
Representative CDS sequence Show only first row Show all	>Lus10009064 pacid=23172395 polypeptide=Lus10009064 locus=Lus10009064.g ID=Lus10009064.BGIv1.0 annot-version=v1.0 ATGAGTTTGGTTGGCAGAGTTGGAAGCCTTATTTCACAAGGCGTTTACTCTGTTGCCACTCCTTTCCACCCCTTTGGTGGAGCTGTTGATGTGATTGTGG TTCAGCAACAGGACGGGACGTTTCGGAGCAATCCTTGGTACGTTCGATTCGGTAAGTTTCAGGGTGTTCTTAAAGGGGCTGAGAAGATTGTGCGTATTGA AGTCAATGGCACTGAAGCTAATTTCCACATGTATCTTGACAATTCTGGCGAGGCTTACTTCATACATGATTCTGGTAAAGTAGGAGAGAAGAGTGGTGAC GAAAAAGACAGCGATGGTGTGAAATTTCCCCAAGATGGGTCAATATGTAAACTTGAACACAGTGTTTCTGATTCTGGTGTGGCACGGTTGCGAGAGGAAC AAGATTTAGTACGTAGCCGACTTGATAGGACGGAGTCTGATGTTGACCGGAGGTATTACGATTTCCCAGATGATCCATCTTCGCCAGTTTCCTTATCAGA ATTTGGTTCCAGTAGATACGACGAGTCTCAAGGTTCAGATTCAGAAGTTATTCTGGTGAGTGTGGATGGACATATATTAACTGCGCCTGTTTCTGTATCG GCAGAGGTTGCTGAGAGTGTGCAGCTGAGCACACCTCAATTTCACTTAGGCCCTGGTGAAGGTACTGAAGAATTCAATTCGGGAGATGATGCGTGGGCAG CTAAATATATTAGTAAGCTGAAGGAATCTCCTTCGGATGCTATATCTGATAAGTCATGTAGTGGTAGTAATGATGAGATTTCTTCCCAAGACCGACTGGA GGTATGTGAAGGTCAAGAGGAATGCAGCTGTCGAATTCAAGAGACTAGGGATATCGCTAGACTGGAAGAAGAGATTCTGATACGAAGTGATTCGGAGGAT GCATCTGCTAGGAGTAGGAAGGGGGGAGTTTTTGGGAGCTGCTTGGCTTTAACAGAATTAGGTGGTGAACATGTTGGAAAAGTTACTTCTGAAACTGTAA ATTCTTCGCTTGAAGTTGATATAATCGTAGAAGAGCCTCCTCATACTCCTTCAGCAGCTAAGGCTCACGATGGATCAAGCGATGATTGTTTTTCTGCTCA GAATTCTGATTCTGCCAGACTTGATGGATCACCTTCATCACTGGTTGAAATTGAAGCTACCGAAACCAGTGTCGTAGAGACTCAAGATGTAGATTTGGAC ACCTTGTCTAATCATTCAGTCAATCAAGAACCACTAAATGAAGAGTTACATGAGTCTACCACGAGGGAAGAGCCAATTGCTATAGAAACACACACGTCTG AAGATCACGACCCTACAAGCGAGGTGGTGCAAGATAATTTAGAAACTTTGCCTGAGGTGTTGCCAAATGCTAACATAAGAATTGAACTCTCTGTCTGTGG GAAAGAACTTCAAGCTGGGATGGGCTTGGATGCTGCTGCTAGAGTCTTTGAAGCACACCGTGTATCTGTGGAGGACTATAAAAGTTCTGCAACATCGATC GTCAAGAGTGAACATTTAATTGTTAGGTATGAGGGCAAGTACTTGCCATGGGAAAAGGCTGCCCCAGTTGTCCTTGGGATAGCTGCATATGATATAGATC TTCCTTTTGATCCGAAAGATGCAATTCCTATCGTACGGGATGACACAGAGACAAGAGATGACGAAAGTGGGTTGCCTACTACACCCTCTAGCCGCAGGTG GAGGCTCTGGCCAAATCCATTTAGAAGGGTTAAAACACTTGAGCACACCAGCAGTACCTCATCAAGTGAAGAATTATTTGTTGATACTGAATCAGGAAAT TTGAGCTCAATTGCAGAGGTGGCTGCTGCTTCCCCTGTCCGTGTCGAGTCTCCTCACAAGCAGTATGTCCGGACCAACGTTCCGACTAGCGAGCAGATAG CATCATTGAATCTAAAAGATGGCCAGAACTTGATAAAATTTAGTTTCTCCACCAGAGTTCTGGGCACTCAACAGGTTGATGCTCACATATACTTGTGGAA GTGGAATGCTAGAATTGTGATTTCAGATGTTGATGGAACAATTACCAAGTCTGATGTCTTAGGTCAGTTTATGCCTTTGGTTGGAAAGGATTGGTCACAA TCTGGAGTGGCTACGCTTTTTTCTGCAATAAAGGAAAATGGATACCAGCTACTGTTTCTAAGTGCACGGGCAATTGTCCAGGCATATTTGACCAGAAGTT TCCTCTTCAACTTAAAACAGGATGGGAAAACCCTTCCGACTGGACCAGTTGTTATTTCACCAGATGGATTGTTTCCATCGTTATATCGCGAAGGTGAGGA CATCAGAAAACTGTTCCCTGCCGAATACAACCCGTTCTATGCAGGCTTTGGTAACCGAGACACCGACGAGCTTAGTTACCGCAAAATCGGTATTCCAAAG GGGAAGATTTTCATCATAAACCCAAAGGGAGAGGTGGCAATCAGTCATCGCATCGACGTGAAGTCTTATACTTCGTTACACACGCTGGTCAACGACATGT TCCCCCCAACATCGCTGGTCGAGCAGGAAGATTACAACTCGTGGAATTTCTGGAGAATGCCACTGCCAGATGTCGATTTGTAG
AA sequence Show only first row Show all	>Lus10009064 pacid=23172395 polypeptide=Lus10009064 locus=Lus10009064.g ID=Lus10009064.BGIv1.0 annot-version=v1.0 MSLVGRVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGTFRSNPWYVRFGKFQGVLKGAEKIVRIEVNGTEANFHMYLDNSGEAYFIHDSGKVGEKSGD EKDSDGVKFPQDGSICKLEHSVSDSGVARLREEQDLVRSRLDRTESDVDRRYYDFPDDPSSPVSLSEFGSSRYDESQGSDSEVILVSVDGHILTAPVSVS AEVAESVQLSTPQFHLGPGEGTEEFNSGDDAWAAKYISKLKESPSDAISDKSCSGSNDEISSQDRLEVCEGQEECSCRIQETRDIARLEEEILIRSDSED ASARSRKGGVFGSCLALTELGGEHVGKVTSETVNSSLEVDIIVEEPPHTPSAAKAHDGSSDDCFSAQNSDSARLDGSPSSLVEIEATETSVVETQDVDLD TLSNHSVNQEPLNEELHESTTREEPIAIETHTSEDHDPTSEVVQDNLETLPEVLPNANIRIELSVCGKELQAGMGLDAAARVFEAHRVSVEDYKSSATSI VKSEHLIVRYEGKYLPWEKAAPVVLGIAAYDIDLPFDPKDAIPIVRDDTETRDDESGLPTTPSSRRWRLWPNPFRRVKTLEHTSSTSSSEELFVDTESGN LSSIAEVAAASPVRVESPHKQYVRTNVPTSEQIASLNLKDGQNLIKFSFSTRVLGTQQVDAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGKDWSQ SGVATLFSAIKENGYQLLFLSARAIVQAYLTRSFLFNLKQDGKTLPTGPVVISPDGLFPSLYREGEDIRKLFPAEYNPFYAGFGNRDTDELSYRKIGIPK GKIFIINPKGEVAISHRIDVKSYTSLHTLVNDMFPPTSLVEQEDYNSWNFWRMPLPDVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	0	1
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	6.3	0.8999
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	8.1	0.8895
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	8.3	0.8311
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	8.8	0.8552
AT4G11670			Protein of unknown function (D...		Lus10006312 [exp]	8.9	0.8836
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	15.2	0.8845
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10027124 [exp]	17.9	0.8715
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	17.9	0.8920
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	19.3	0.8488
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	20.0	0.8810

Compare expression of checked genes

Lus10009064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.