Plant FIBer expression Database

Lus10009066 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02640 94 / 7e-25 unknown protein
AT3G46310 54 / 6e-10 unknown protein
AT3G46300 54 / 8e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025282
[exp]
186 / 5e-61 AT5G02640 130 / 4e-39 unknown protein
Lus10038485
[exp]
69 / 4e-15 AT5G02640 73 / 9e-17 unknown protein
Lus10023327
[exp]
67 / 2e-14 AT5G02640 79 / 3e-19 unknown protein
Lus10037654
[exp]
42 / 5e-05 ND 41 / 2e-05
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G081600
[exp]
141 / 1e-43 AT5G02640 144 / 1e-44 unknown protein
Potri.006G215000
[exp]
134 / 5e-41 AT5G02640 144 / 1e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10009066 pacid=23172425 polypeptide=Lus10009066 locus=Lus10009066.g ID=Lus10009066.BGIv1.0 annot-version=v1.0
ATGGCGTCAGTATGTATTCAGAAGTGCGTGAACGACACGCGAGACCCACGGGTTCCGGTCCGGACTACCGAGTCGGTGGACGCCGAGCTGATCAAGTCGG
TCCGGCGCGTGGGGCAAGGGATTCGACAATATCAGCAGCCGAGAGTGGTGGACAGTATCTCCTGCAGGCAGATGTATCTTAGGAGCTACACTTTTTCAAG
AAAGGAGACCGTGCCGGAGAAGACCAGGAAGTGCTTCGGGAAAGTCAAAGACATTGTTTCGTCATGCGGCGGCGGACATCAATCTTCGCAAGGAAAGAAT
AATAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAATGACGGCGCCGGGAGATCAGGGCGGCGGAAAGGCGGCGTAGGCGGGAGGAAGGGTATGGTGATAA
GGAAAGTGAAGGAGATGTCATGCGGGGCATTGTACAGGATTTTCCACAGGTTGTTGTCTTGTGCTACTAGCGTAGATGTTGTCGACTCTAAACTTTAA
AA sequence
>Lus10009066 pacid=23172425 polypeptide=Lus10009066 locus=Lus10009066.g ID=Lus10009066.BGIv1.0 annot-version=v1.0
MASVCIQKCVNDTRDPRVPVRTTESVDAELIKSVRRVGQGIRQYQQPRVVDSISCRQMYLRSYTFSRKETVPEKTRKCFGKVKDIVSSCGGGHQSSQGKN
NKKKKKKKKKRNDGAGRSGRRKGGVGGRKGMVIRKVKEMSCGALYRIFHRLLSCATSVDVVDSKL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02640 unknown protein Lus10009066
[exp]
0 1
AT5G40020 Pathogenesis-related thaumatin... Lus10008304
[exp]
1.7 0.9575
AT5G34850 ATPAP26, PAP26 purple acid phosphatase 26 (.1... Lus10039978
[exp]
3.0 0.9443
AT2G28410 unknown protein Lus10021476
[exp]
6.6 0.9417
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Lus10019122
[exp]
6.6 0.9557
AT5G02640 unknown protein Lus10025282
[exp]
7.1 0.9534
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Lus10034439
[exp]
8.9 0.9435
AT4G11950 Protein of unknown function (D... Lus10014138
[exp]
9.2 0.9501
AT5G58350 ZIK2, WNK4 with no lysine (K) kinase 4 (.... Lus10042223
[exp]
10.0 0.9131
AT1G06980 unknown protein Lus10025927
[exp]
10.9 0.8913
AT2G28315 Nucleotide/sugar transporter f... Lus10021464
[exp]
11.1 0.9504

Lus10009066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.